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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123409325   beta-amylase 1, chloroplastic-like 
 hvu-r.1   123439066   beta-amylase 3, chloroplastic 
 hvu-r.1   123449861   beta-amylase 2, chloroplastic-like 
 tae-r.2   123052101   beta-amylase 3, chloroplastic 
 tae-r.2   123093753   beta-amylase 2, chloroplastic 
 tae-r.2   123128167   beta-amylase 3, chloroplastic 
 bdi-r.1   100835267   beta-amylase 2, chloroplastic 
 bdi-r.1   100827802   beta-amylase 3, chloroplastic 
 osa-u.5   4349417   beta-amylase 3, chloroplastic 
 osa-u.5   4348840   beta-amylase 1, chloroplastic-like 
 osa-u.5   4331577   beta-amylase 2, chloroplastic-like 
 zma-u.5   100502394   Beta-amylase 3 chloroplastic 
 zma-u.5   100281141   beta-amylase 
 zma-u.5   103637673   beta-amylase 3, chloroplastic 
 sbi-r.1   8070506   beta-amylase 1, chloroplastic 
 sbi-r.1   8080586   beta-amylase 1, chloroplastic 
 sbi-r.1   8058060   beta-amylase 3, chloroplastic 
 ath-u.5   BAM1   beta-amylase 1 
 ath-u.5   CT-BMY   chloroplast beta-amylase 
 gma-u.5   BMY2   beta-amylase 
 gma-u.5   100818063   beta-amylase 3, chloroplastic 
 gma-u.5   100784912   beta-amylase 3, chloroplastic 
 sly-u.5   101259175   beta-amylase 3, chloroplastic-like 
 sly-u.5   101253815   beta-amylase 3, chloroplastic 
 sly-u.5   BAM1   beta-amylase 
 bra-r.6   103860895   beta-amylase 3, chloroplastic 
 bra-r.6   103828653   beta-amylase 1, chloroplastic 
 bra-r.6   103860025   beta-amylase 1, chloroplastic 
 vvi-u.5   100261291   beta-amylase 1, chloroplastic 
 vvi-u.5   100247246   beta-amylase 3, chloroplastic 
 vvi-u.5   100242636   beta-amylase 1, chloroplastic 
 ppo-u.5   7475438   beta-amylase 1, chloroplastic 
 ppo-u.5   7494763   beta-amylase 1, chloroplastic 
 ppo-u.5   18096911   beta-amylase 3, chloroplastic 
 mtr-u.5   11439428   beta-amylase 3, chloroplastic 
 mtr-u.5   11438460   beta-amylase 3, chloroplastic 
 mtr-u.5   25493571   beta-amylase 3, chloroplastic 
 ghi-r.1   107914952   beta-amylase 1, chloroplastic 
 ghi-r.1   107912196   beta-amylase 3, chloroplastic 
 ghi-r.1   107891884   beta-amylase 1, chloroplastic 
 bna-r.1   125607043   beta-amylase 1, chloroplastic-like 
 bna-r.1   106375875   beta-amylase 3, chloroplastic-like 
 bna-r.1   106411687   beta-amylase 1, chloroplastic 
 sot-r.1   102584887   beta-amylase 1, chloroplastic 
 sot-r.1   102577806   beta-amylase PCT-BMYI 
 sot-r.1   102594291   beta-amylase 3, chloroplastic-like 
 cit-r.1   102626673   beta-amylase 1, chloroplastic 
 nta-r.1   142179393   beta-amylase 3, chloroplastic-like 
 nta-r.1   107782776   beta-amylase 1, chloroplastic 
 nta-r.1   107813561   beta-amylase 3, chloroplastic 
 cre-r.1   CHLRE_06g307150v5   uncharacterized protein 

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Top 50 coexpressed genes to 123409325 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123409325 (hvu-r.1 coexpression data)

CoexMap"123409325"


hvuLOC123409325 | Entrez gene ID : 123409325    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 3 2 3 3 3 2 3 3 3 3 3 3 3 3 3 1 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg00500 [list] [network] Starch and sucrose metabolism (193 genes)
GO BP
GO:0000272 [list] [network] polysaccharide catabolic process  (51 genes)  IEA  
GO CC
GO MF
GO:0016161 [list] [network] beta-amylase activity  (11 genes)  IEA  
Protein XP_044958198.1 [sequence] [blastp]
XP_044958202.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 4  (predict for XP_044958198.1)
cyto 7,  chlo 3  (predict for XP_044958202.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_044958198.1)
chlo 7  (predict for XP_044958202.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123409325
hvu-r.1
for
123439066
hvu-r.1
for
123449861
tae-r.2
for
123052101
tae-r.2
for
123093753
tae-r.2
for
123128167
bdi-r.1
for
100835267
bdi-r.1
for
100827802
osa-u.5
for
4349417
osa-u.5
for
4348840
osa-u.5
for
4331577
zma-u.5
for
100502394
zma-u.5
for
100281141
zma-u.5
for
103637673
sbi-r.1
for
8070506
sbi-r.1
for
8080586
sbi-r.1
for
8058060
ath-u.5
for
BAM1
ath-u.5
for
CT-BMY
gma-u.5
for
BMY2
gma-u.5
for
100818063
gma-u.5
for
100784912
sly-u.5
for
101259175
sly-u.5
for
101253815
sly-u.5
for
BAM1
bra-r.6
for
103860895
bra-r.6
for
103828653
bra-r.6
for
103860025
vvi-u.5
for
100261291
vvi-u.5
for
100247246
vvi-u.5
for
100242636
ppo-u.5
for
7475438
ppo-u.5
for
7494763
ppo-u.5
for
18096911
mtr-u.5
for
11439428
mtr-u.5
for
11438460
mtr-u.5
for
25493571
ghi-r.1
for
107914952
ghi-r.1
for
107912196
ghi-r.1
for
107891884
bna-r.1
for
125607043
bna-r.1
for
106375875
bna-r.1
for
106411687
sot-r.1
for
102584887
sot-r.1
for
102577806
sot-r.1
for
102594291
cit-r.1
for
102626673
nta-r.1
for
142179393
nta-r.1
for
107782776
nta-r.1
for
107813561
cre-r.1
for
CHLRE_06g307150v5


Ortholog ID: 1176
Species hvu hvu tae tae tae bdi bdi osa osa osa zma zma zma sbi sbi sbi ath ath gma gma gma sly sly sly bra bra bra vvi vvi vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot sot cit nta nta nta cre
Symbol LOC123409325 LOC123449861 LOC123052101 LOC123128167 LOC123181646 LOC100835267 LOC100827802 LOC4349417 LOC4348840 LOC4331577 LOC100502394 LOC100281141 LOC100281767 LOC8070506 LOC8080586 LOC8058060 BAM1 CT-BMY BMY2 LOC100784912 LOC100781423 LOC101259175 LOC101253815 BAM1 LOC103860895 LOC103828653 LOC103860025 LOC100261291 LOC100247246 LOC100242636 LOC7494763 LOC18096911 LOC11439428 LOC11438460 LOC25493571 LOC107912196 LOC107915051 LOC107888905 LOC125607043 LOC106450573 LOC106437457 LOC102584887 LOC102577806 LOC102594291 LOC102626673 LOC142179393 LOC107814151 LOC107771686 CHLRE_06g307150v5
Function* beta-amylase 1, chloroplastic-like beta-amylase 2, chloroplastic-like beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 2, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic-like beta-amylase 2, chloroplastic-like Beta-amylase 3 chloroplastic beta-amylase uncharacterized LOC100281767 beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic beta-amylase 1 chloroplast beta-amylase beta-amylase beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic-like beta-amylase 3, chloroplastic beta-amylase beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 3, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic beta-amylase 1, chloroplastic-like beta-amylase 1, chloroplastic-like beta-amylase 3, chloroplastic-like beta-amylase 1, chloroplastic beta-amylase PCT-BMYI beta-amylase 3, chloroplastic-like beta-amylase 1, chloroplastic beta-amylase 3, chloroplastic-like beta-amylase 3, chloroplastic-like beta-amylase 3, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
hvu00760 Nicotinate and nicotinamide metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 6
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00220 Arginine biosynthesis 2
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00910 Nitrogen metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 5
osa04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 3
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 2
zma04016 MAPK signaling pathway - plant 2
zma04075 Plant hormone signal transduction 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00561 Glycerolipid metabolism 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 5
sbi04075 Plant hormone signal transduction 5
sbi04141 Protein processing in endoplasmic reticulum 2
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00052 Galactose metabolism 2
sbi00260 Glycine, serine and threonine metabolism 2
sbi00310 Lysine degradation 2
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath04016 MAPK signaling pathway - plant 3
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00730 Thiamine metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 5
gma00592 alpha-Linolenic acid metabolism 3
gma00640 Propanoate metabolism 2
gma00190 Oxidative phosphorylation 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 5
gma00592 alpha-Linolenic acid metabolism 3
gma00640 Propanoate metabolism 2
gma00190 Oxidative phosphorylation 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 5
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 4
sly04075 Plant hormone signal transduction 4
sly00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 3
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bra00350 Tyrosine metabolism 3
bra00360 Phenylalanine metabolism 3
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 2
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 10
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00562 Inositol phosphate metabolism 4
bna00740 Riboflavin metabolism 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00561 Glycerolipid metabolism 3
sot00280 Valine, leucine and isoleucine degradation 3
sot00100 Steroid biosynthesis 2
sot00564 Glycerophospholipid metabolism 2
sot00565 Ether lipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 9
nta00100 Steroid biosynthesis 3
nta00561 Glycerolipid metabolism 3
nta00564 Glycerophospholipid metabolism 3
nta00565 Ether lipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123409325 123449861 123052101 123128167 123181646 100835267 100827802 4349417 4348840 4331577 100502394 100281141 100281767 8070506 8080586 8058060 821975 827419 547683 100784912 100781423 101259175 101253815 100736451 103860895 103828653 103860025 100261291 100247246 100242636 7494763 18096911 11439428 11438460 25493571 107912196 107915051 107888905 125607043 106450573 106437457 102584887 102577806 102594291 102626673 142179393 107814151 107771686 5716864
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