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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   rps4   ribosomal protein S4 
 ath-u.5   AT2G07734   Alpha-L RNA-binding motif/Ribosomal protein S4 family protein 
 ath-u.5   rps4   ribosomal protein S4 
 sly-u.5   rps4   ribosomal protein S4 
 vvi-u.5   rps4   ribosomal protein S4 
 vvi-u.5   104878382   small ribosomal subunit protein uS4m 
 mtr-u.5   rps4   ribosomal protein S4 
 ghi-r.1   rps4   ribosomal protein S4 
 bna-r.1   rps4   ribosomal protein S4 
 cit-r.1   rps4   ribosomal protein S4 
 nta-r.1   rps4   ribosomal protein S4 
 nta-r.1   142181942   small ribosomal subunit protein uS4m-like 

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Top 50 coexpressed genes to rps4 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rps4 (sbi-r.1 coexpression data)

CoexMap"123416986"


hvuLOC123416986 | Entrez gene ID : 123416986    
Species sbi ath sly vvi mtr ghi bna cit nta sot bdi osa tae ppo zma cre hvu gma bra
Paralog 1 2 1 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG hvg03010 [list] [network] Ribosome (15126 genes)
GO BP
GO:0045903 [list] [network] positive regulation of translational fidelity  (6 genes)  IEA  
GO CC
GO:0015935 [list] [network] small ribosomal subunit  (148 genes)  IEA  
GO MF
GO:0019843 [list] [network] rRNA binding  (135 genes)  IEA  
GO:0003735 [list] [network] structural constituent of ribosome  (445 genes)  IEA  
Protein XP_044962777.1 [sequence] [blastp]
XP_044962778.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 3  (predict for XP_044962777.1)
chlo 6,  cyto 2,  nucl 1,  mito 1  (predict for XP_044962778.1)
Subcellular
localization
TargetP
mito 7,  chlo 6  (predict for XP_044962777.1)
mito 7,  chlo 6  (predict for XP_044962778.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
rps4
ath-u.5
for
AT2G07734
ath-u.5
for
rps4
sly-u.5
for
rps4
vvi-u.5
for
rps4
vvi-u.5
for
104878382
mtr-u.5
for
rps4
ghi-r.1
for
rps4
bna-r.1
for
rps4
cit-r.1
for
rps4
nta-r.1
for
rps4
nta-r.1
for
142181942


Ortholog ID: 9977
Species sbi ath ath sly vvi vvi mtr ghi bna cit nta nta
Symbol rps4 AT2G07734 rps4 rps4 rps4 LOC104878382 rps4 rps4 rps4 rps4 rps4 LOC142181942
Function* ribosomal protein S4 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 small ribosomal subunit protein uS4m ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 ribosomal protein S4 small ribosomal subunit protein uS4m-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi00190 Oxidative phosphorylation 7
sbi03020 RNA polymerase 4
sbi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 9
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 9
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 9
sly03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 13
vvi03010 Ribosome 5
vvi00020 Citrate cycle (TCA cycle) 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 8
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 12
mtr03010 Ribosome 3
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 12
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 10
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 10
cit03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 7
nta03010 Ribosome 5
nta00020 Citrate cycle (TCA cycle) 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4306028 815406 36335688 34678310 7498552 104878382 26974350 24679521 4237950 36487014 3205186 142181942
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