ATTED-II : GeneCoexpression result

Species	Gene	Description
hvu-r.1	123443201	protein RAE1
osa-u.5	4344798	protein RAE1
osa-u.5	4326570	protein RAE1
zma-u.5	100283675	rae1-like protein
zma-u.5	100286267	rae1-like protein
ath-u.5	RAE1	Transducin/WD40 repeat-like superfamily protein
gma-u.5	100819240	putative mRNA export factor
gma-u.5	100803005	protein RAE1
gma-u.5	100780721	rae1-like protein At1g80670-like
sly-u.5	101247869	protein RAE1
vvi-u.5	100250245	protein RAE1
vvi-u.5	100250787	protein RAE1
ppo-u.5	7478293	protein RAE1
ppo-u.5	7490684	protein RAE1
mtr-u.5	11428530	protein RAE1
mtr-u.5	25501437	protein RAE1

functional annotation

KEGG

hvg03013 [list] [network] Nucleocytoplasmic transport (118 genes)

GO BP

GO:0000972 [list] [network] transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	(13 genes)	IEA
GO:0006405 [list] [network] RNA export from nucleus	(48 genes)	IEA

GO CC

GO:0005643 [list] [network] nuclear pore

(48 genes)

IEA

GO MF

GO:0043130 [list] [network] ubiquitin binding	(73 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1359 genes)	IEA

Protein

XP_044975471.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 2, cyto 1, mito 1, pero 1, cyto_pero 1

(predict for XP_044975471.1)

Subcellular
localization
TargetP

chlo 9

(predict for XP_044975471.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	hvu-r.1 for 123443201	osa-u.5 for 4344798	osa-u.5 for 4326570	zma-u.5 for 100283675	zma-u.5 for 100286267	ath-u.5 for RAE1	gma-u.5 for 100819240	gma-u.5 for 100803005	gma-u.5 for 100780721	sly-u.5 for 101247869	vvi-u.5 for 100250245	vvi-u.5 for 100250787	ppo-u.5 for 7478293	ppo-u.5 for 7490684	mtr-u.5 for 11428530	mtr-u.5 for 25501437

Ortholog ID: 4017

Species

hvu

tae

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

nta

cre

Symbol

RAE1

Function^*

protein RAE1

protein RAE1-like

protein RAE1

rae1-like protein

protein RAE1

Transducin/WD40 repeat-like superfamily protein

putative mRNA export factor

protein RAE1

protein RAE1-like

protein RAE1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03018	RNA degradation	2
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	11
tae03008	Ribosome biogenesis in eukaryotes	5
tae03250	Viral life cycle - HIV-1	5
tae03030	DNA replication	2
tae03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	2
bdi03015	mRNA surveillance pathway	2
bdi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	6
bdi01200	Carbon metabolism	3
bdi01230	Biosynthesis of amino acids	2
bdi00620	Pyruvate metabolism	2
bdi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	4
osa03010	Ribosome	3
osa03410	Base excision repair	2
osa03420	Nucleotide excision repair	2
osa03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	4
zma03022	Basal transcription factors	2
zma03420	Nucleotide excision repair	2
zma04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03008	Ribosome biogenesis in eukaryotes	3
zma03250	Viral life cycle - HIV-1	3
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	4
sbi03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	7
ath03008	Ribosome biogenesis in eukaryotes	4
ath03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6
gma00510	N-Glycan biosynthesis	6
gma04141	Protein processing in endoplasmic reticulum	6
gma00513	Various types of N-glycan biosynthesis	5
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	4
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03013	Nucleocytoplasmic transport	3
ppo00061	Fatty acid biosynthesis	2
ppo03040	Spliceosome	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03013	Nucleocytoplasmic transport	3
ppo03010	Ribosome	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	3
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	8
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03250	Viral life cycle - HIV-1	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	8
ghi03008	Ribosome biogenesis in eukaryotes	6
ghi03250	Viral life cycle - HIV-1	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	14
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	5
sot03040	Spliceosome	3
sot03008	Ribosome biogenesis in eukaryotes	3
sot03250	Viral life cycle - HIV-1	3
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	6
nta03008	Ribosome biogenesis in eukaryotes	4
nta03250	Viral life cycle - HIV-1	4
nta00190	Oxidative phosphorylation	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	6
nta03008	Ribosome biogenesis in eukaryotes	4
nta03250	Viral life cycle - HIV-1	4
nta00230	Purine metabolism	2
nta00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	8
cre03013	Nucleocytoplasmic transport	4
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

123443201

123443939

123104522

123061557

100830773

100846303

4326570

4344798

100283675

100286267

8058208

110437059

844406

100819240

100527204

101247869

103832465

103853226

100250245

100250787

7478293

7490684

11428530

25501437

107906437

107958446

106396744

106354833

102590604

107825929

107767524

5723672

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 123443201 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123443201 (hvu-r.1 coexpression data)


Species	hvu	osa	zma	ath	gma	sly	vvi	ppo	mtr	bdi	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	1	2	2	1	3	1	2	2	2	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 123443201 (hvu-r.1 coexpression data)

Top 50 enrichment test to 123443201 (hvu-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**