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Orthologous genes in OrthoFinder**

Species Gene Description
 hvu-r.1   123448239   ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic 
 hvu-r.1   123448238   ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic 
 tae-r.2   542853   ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic 
 tae-r.2   732707   ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic 
 tae-r.2   123086288   ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic 
 bdi-r.1   104584416   ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic 
 bdi-r.1   100836073   ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic 
 osa-u.5   4351224   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 zma-u.5   541712   RUBISCO activase 1 
 zma-u.5   100382265   RUBISCO activase1 
 sbi-r.1   8086041   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 sbi-r.1   8086040   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ath-u.5   RCA   rubisco activase 
 gma-u.5   RCA11   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 gma-u.5   RCA14   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 gma-u.5   RCAALPHA   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 sly-u.5   101250725   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic 
 sly-u.5   101249777   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 bra-r.6   103867016   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 bra-r.6   103857877   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 bra-r.6   RCA   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 vvi-u.5   100263871   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 vvi-u.5   100266698   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 vvi-u.5   100256315   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ppo-u.5   7458129   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ppo-u.5   7487971   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 mtr-u.5   11412610   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 mtr-u.5   25489329   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 mtr-u.5   11442149   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 ghi-r.1   107900463   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic-like 
 ghi-r.1   107930076   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 ghi-r.1   107942112   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic-like 
 bna-r.1   106420698   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 bna-r.1   106438075   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 bna-r.1   106447457   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 sot-r.1   102590242   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 sot-r.1   102596435   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 cit-r.1   102627294   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic 
 cit-r.1   102630057   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 nta-r.1   107819807   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic 
 nta-r.1   107802027   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 nta-r.1   107798594   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 cre-r.1   CHLRE_04g229300v5   uncharacterized protein 

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Top 50 coexpressed genes to 123448239 (hvu-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 123448239 (hvu-r.1 coexpression data)

CoexMap"123448239"


hvuLOC123448239 | Entrez gene ID : 123448239    
Species hvu tae bdi osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 2 1 2 2 1 3 2 3 3 2 3 3 3 2 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009570 [list] [network] chloroplast stroma  (114 genes)  IEA  
GO:0009579 [list] [network] thylakoid  (310 genes)  IEA  
GO MF
GO:0046863 [list] [network] ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity  (2 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (576 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2546 genes)  IEA  
Protein XP_044981004.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for XP_044981004.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_044981004.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

hvu-r.1
for
123448239
hvu-r.1
for
123448238
tae-r.2
for
542853
tae-r.2
for
732707
tae-r.2
for
123086288
bdi-r.1
for
104584416
bdi-r.1
for
100836073
osa-u.5
for
4351224
zma-u.5
for
541712
zma-u.5
for
100382265
sbi-r.1
for
8086041
sbi-r.1
for
8086040
ath-u.5
for
RCA
gma-u.5
for
RCA11
gma-u.5
for
RCA14
gma-u.5
for
RCAALPHA
sly-u.5
for
101250725
sly-u.5
for
101249777
bra-r.6
for
103867016
bra-r.6
for
103857877
bra-r.6
for
RCA
vvi-u.5
for
100263871
vvi-u.5
for
100266698
vvi-u.5
for
100256315
ppo-u.5
for
7458129
ppo-u.5
for
7487971
mtr-u.5
for
11412610
mtr-u.5
for
25489329
mtr-u.5
for
11442149
ghi-r.1
for
107900463
ghi-r.1
for
107930076
ghi-r.1
for
107942112
bna-r.1
for
106420698
bna-r.1
for
106438075
bna-r.1
for
106447457
sot-r.1
for
102590242
sot-r.1
for
102596435
cit-r.1
for
102627294
cit-r.1
for
102630057
nta-r.1
for
107819807
nta-r.1
for
107802027
nta-r.1
for
107798594
cre-r.1
for
CHLRE_04g229300v5


Ortholog ID: 2625
Species hvu hvu tae tae tae bdi bdi osa zma zma sbi sbi ath gma gma gma sly sly bra bra bra vvi vvi vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta cre
Symbol LOC123448239 LOC123448238 LOC732707 LOC123091750 LOC123091751 LOC104584416 LOC100836073 LOC4351224 LOC541712 LOC100382265 LOC8086041 LOC8086040 RCA RCA11 RCAALPHA RCABETA LOC101250725 LOC101249777 LOC103867016 LOC103857877 RCA LOC100263871 LOC100266698 LOC100256315 LOC7458129 LOC7487971 LOC11412610 LOC25489329 LOC11442149 LOC107900463 LOC107962030 LOC107948056 LOC106447457 LOC106396217 LOC106381751 LOC102590242 LOC102596435 LOC102627294 LOC102630057 LOC107819807 LOC107793435 LOC107765793 CHLRE_04g229300v5
Function* ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like RUBISCO activase 1 RUBISCO activase1 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic rubisco activase ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 8
hvu00630 Glyoxylate and dicarboxylate metabolism 7
hvu00710 Carbon fixation by Calvin cycle 4
hvu00260 Glycine, serine and threonine metabolism 4
hvu00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 6
hvu00630 Glyoxylate and dicarboxylate metabolism 6
hvu00195 Photosynthesis 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00195 Photosynthesis 3
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 4
tae00710 Carbon fixation by Calvin cycle 3
tae04141 Protein processing in endoplasmic reticulum 3
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 9
bdi00630 Glyoxylate and dicarboxylate metabolism 8
bdi00710 Carbon fixation by Calvin cycle 6
bdi00260 Glycine, serine and threonine metabolism 2
bdi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 6
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi00195 Photosynthesis 2
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00195 Photosynthesis 4
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 11
zma00710 Carbon fixation by Calvin cycle 10
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00010 Glycolysis / Gluconeogenesis 3
zma00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 9
zma00710 Carbon fixation by Calvin cycle 7
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00195 Photosynthesis 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 3
sbi00860 Porphyrin metabolism 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 5
sbi00196 Photosynthesis - antenna proteins 5
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00710 Carbon fixation by Calvin cycle 10
ath01200 Carbon metabolism 10
ath00195 Photosynthesis 6
ath01230 Biosynthesis of amino acids 3
ath00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 10
gma01200 Carbon metabolism 10
gma00030 Pentose phosphate pathway 4
gma01230 Biosynthesis of amino acids 3
gma00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 7
gma01200 Carbon metabolism 7
gma00195 Photosynthesis 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00710 Carbon fixation by Calvin cycle 5
sly01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 12
sly00710 Carbon fixation by Calvin cycle 11
sly00030 Pentose phosphate pathway 5
sly00010 Glycolysis / Gluconeogenesis 4
sly00051 Fructose and mannose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 4
bra00195 Photosynthesis 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 9
bra01200 Carbon metabolism 9
bra00195 Photosynthesis 6
bra00010 Glycolysis / Gluconeogenesis 4
bra01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 11
vvi00710 Carbon fixation by Calvin cycle 9
vvi00010 Glycolysis / Gluconeogenesis 4
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 6
vvi00630 Glyoxylate and dicarboxylate metabolism 5
vvi00260 Glycine, serine and threonine metabolism 3
vvi04146 Peroxisome 3
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 10
vvi00710 Carbon fixation by Calvin cycle 9
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 7
ppo00710 Carbon fixation by Calvin cycle 6
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 7
ppo01200 Carbon metabolism 7
ppo00195 Photosynthesis 6
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 8
mtr00710 Carbon fixation by Calvin cycle 6
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00030 Pentose phosphate pathway 3
mtr00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 8
mtr00710 Carbon fixation by Calvin cycle 7
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00030 Pentose phosphate pathway 3
mtr00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 3
ghi00195 Photosynthesis 3
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi00195 Photosynthesis 3
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 7
sot00195 Photosynthesis 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 8
sot00710 Carbon fixation by Calvin cycle 7
sot00630 Glyoxylate and dicarboxylate metabolism 5
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 10
cit01200 Carbon metabolism 6
cit00710 Carbon fixation by Calvin cycle 4
cit00010 Glycolysis / Gluconeogenesis 3
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 4
nta01200 Carbon metabolism 4
nta04146 Peroxisome 4
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 3
nta04146 Peroxisome 3
nta00380 Tryptophan metabolism 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 4
nta01200 Carbon metabolism 4
nta04146 Peroxisome 4
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 7
cre01200 Carbon metabolism 7
cre00030 Pentose phosphate pathway 4
cre01230 Biosynthesis of amino acids 3
cre00500 Starch and sucrose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 123448239 123448238 732707 123091750 123091751 104584416 100836073 4351224 541712 100382265 8086041 8086040 818558 100818034 100806240 100797222 101250725 101249777 103867016 103857877 103865740 100263871 100266698 100256315 7458129 7487971 11412610 25489329 11442149 107900463 107962030 107948056 106447457 106396217 106381751 102590242 102596435 102627294 102630057 107819807 107793435 107765793 5717936
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