ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4348647	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like
zma-u.5	103643555	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
zma-u.5	100216585	uncharacterized LOC100216585
ath-u.5	ARD3	acireductone dioxygenase 3
ath-u.5	ATARD2	RmlC-like cupins superfamily protein
ath-u.5	ARD1	acireductone dioxygenase 1
gma-u.5	100500632	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4
gma-u.5	100500592	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like protein
gma-u.5	100812492	putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
sly-u.5	ARD	acireductone dioxygenase
sly-u.5	101255136	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1
vvi-u.5	104879260	acireductone dioxygenase 1
vvi-u.5	100232920	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like
ppo-u.5	7467506	acireductone dioxygenase 2
ppo-u.5	7473428	acireductone dioxygenase 1
mtr-u.5	25485141	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
mtr-u.5	25485143	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

Top 50 coexpressed genes to 4348647 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4348647 (osa-u.5 coexpression data)

CoexMap"124958009"

[Cytoscape]

Annotation

functional annotation

KEGG

osa00270 [list] [network] Cysteine and methionine metabolism (127 genes)

GO BP

GO:0019509 [list] [network] L-methionine salvage from methylthioadenosine

(8 genes)

IEA

GO CC

GO MF

GO:0010309 [list] [network] acireductone dioxygenase [iron(II)-requiring] activity

(4 genes)

IEA

Protein

NP_001390946.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 1, mito 1, extr 1, cysk 1, golg 1, cysk_nucl 1

(predict for NP_001390946.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001390946.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4348647 .	zma-u.5 for 103643555 .	zma-u.5 for 100216585 .	ath-u.5 for ARD3 .	ath-u.5 for ATARD2 .	ath-u.5 for ARD1 .	gma-u.5 for 100500632 .	gma-u.5 for 100500592 .	gma-u.5 for 100812492 .	sly-u.5 for ARD .	sly-u.5 for 101255136 .	vvi-u.5 for 104879260 .	vvi-u.5 for 100232920 .	ppo-u.5 for 7467506 .	ppo-u.5 for 7473428 .	mtr-u.5 for 25485141 .	mtr-u.5 for 25485143 .

Ortholog

Ortholog ID: 2618

Species

ath

gma

sly

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

ARD3

ARD4

ARD

ARD

Function^*

acireductone dioxygenase 3

RmlC-like cupins superfamily protein

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase-like protein

putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase

acireductone dioxygenase

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

uncharacterized LOC100216585

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

acireductone dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2-like

acireductone dioxygenase 1

acireductone dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

acireductone dioxygenase 4

acireductone dioxygenase 4-like

uncharacterized protein

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4-like

acireductone dioxygenase

acireductone dioxygenase 1

acireductone dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4

acireductone dioxygenase 1

acireductone dioxygenase 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	4
gma00520	Amino sugar and nucleotide sugar metabolism	4
gma01250	Biosynthesis of nucleotide sugars	4
gma00270	Cysteine and methionine metabolism	2
gma00562	Inositol phosphate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00270	Cysteine and methionine metabolism	5
sly00480	Glutathione metabolism	3
sly00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00190	Oxidative phosphorylation	5
zma00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04146	Peroxisome	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	6
ppo00710	Carbon fixation by Calvin cycle	5
ppo00010	Glycolysis / Gluconeogenesis	2
ppo00030	Pentose phosphate pathway	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	4
ppo00965	Betalain biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	4
mtr00270	Cysteine and methionine metabolism	3
mtr04136	Autophagy - other	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03060	Protein export	2
tae04141	Protein processing in endoplasmic reticulum	2
tae04145	Phagosome	2
tae00270	Cysteine and methionine metabolism	2
tae00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00270	Cysteine and methionine metabolism	3
hvu03050	Proteasome	2
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2
ghi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00270	Cysteine and methionine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00270	Cysteine and methionine metabolism	5
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00480	Glutathione metabolism	4
sot00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00270	Cysteine and methionine metabolism	3
bdi00230	Purine metabolism	2
bdi01232	Nucleotide metabolism	2
bdi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00906	Carotenoid biosynthesis	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	5
nta03040	Spliceosome	2
nta00010	Glycolysis / Gluconeogenesis	2
nta00380	Tryptophan metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

817180

834407

100500592

100306042

101255431

101255136

100216585

103643555

103871834

103848836

104879260

100232920

7473428

7467506

25485141

25485143

123130632

123130633

123449509

123449326

107929178

107928423

106455045

106409006

5719530

8059441

110431801

102577691

102624829

102625112

100837759

100828612

107794003

107794012

The preparation time of this page was 0.1 [sec].


Species	osa	zma	ath	gma	sly	vvi	ppo	mtr	sot	hvu	tae	cit	sbi	ghi	cre	bna	nta	bdi	bra
Paralog	1	2	3	3	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4348647 (osa-u.5 coexpression data)

Top 50 enrichment test to 4348647 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**