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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G07340   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT3G23690   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT5G48560   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100776143   transcription factor bHLH62 
 gma-u.5   100801233   transcription factor bHLH62 
 gma-u.5   100812081   transcription factor bHLH62 
 vvi-u.5   100259005   transcription factor bHLH77 
 ppo-u.5   7488588   transcription factor bHLH77 
 ppo-u.5   7471175   transcription factor bHLH62 
 ppo-u.5   7462032   transcription factor bHLH77 
 mtr-u.5   11419890   transcription factor bHLH62 
 mtr-u.5   25498190   transcription factor bHLH62 
 sly-u.5   101262401   transcription factor bHLH78-like 
 sly-u.5   101263721   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 sly-u.5   101265273   transcription factor bHLH62-like 
 osa-u.5   4347486   transcription factor BHLH089-like 
 osa-u.5   4346087   transcription factor BHLH094-like 
 osa-u.5   4324327   transcription factor bHLH77 
 zma-u.5   100502193   uncharacterized LOC100502193 
 zma-u.5   100285547   BHLH transcription factor 
 zma-u.5   100278938   uncharacterized LOC100278938 

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Top 50 coexpressed genes to AT3G07340 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G07340 (ath-u.5 coexpression data)

CoexMap"125575488"


bnaLOC125575488 | Entrez gene ID : 125575488    
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 1 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (5322 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3791 genes)  IEA  
Protein XP_048615746.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 4,  cyto 2,  chlo 1,  mito 1,  chlo_mito 1,  golg_plas 1  (predict for XP_048615746.1)
Subcellular
localization
TargetP
other 9  (predict for XP_048615746.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
AT3G07340

.
ath-u.5
for
AT3G23690

.
ath-u.5
for
AT5G48560

.
gma-u.5
for
100776143

.
gma-u.5
for
100801233

.
gma-u.5
for
100812081

.
vvi-u.5
for
100259005

.
ppo-u.5
for
7488588

.
ppo-u.5
for
7471175

.
ppo-u.5
for
7462032

.
mtr-u.5
for
11419890

.
mtr-u.5
for
25498190

.
sly-u.5
for
101262401

.
sly-u.5
for
101263721

.
sly-u.5
for
101265273

.
osa-u.5
for
4347486

.
osa-u.5
for
4346087

.
osa-u.5
for
4324327

.
zma-u.5
for
100502193

.
zma-u.5
for
100285547

.
zma-u.5
for
100278938

.


Ortholog ID: 1201
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G48560 AT3G23690 LOC100812081 LOC100776143 LOC101262401 LOC101268319 LOC4347486 LOC4346087 LOC100216628 LOC100285547 LOC103832202 LOC103874966 LOC100259005 LOC7471175 LOC7488588 LOC25498190 LOC11419890 LOC123063055 LOC123168036 LOC123407905 LOC123445198 LOC107914772 LOC121232156 LOC106364928 LOC106425145 LOC8056168 LOC110433137 LOC102591091 LOC102590121 LOC102618495 LOC102615527 LOC100838672 LOC100836886 LOC107820619 LOC107764585
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH62 transcription factor bHLH62 transcription factor bHLH78-like transcription factor bHLH62 transcription factor BHLH089-like transcription factor BHLH094-like Transcription factor bHLH62 BHLH transcription factor transcription factor bHLH77 transcription factor bHLH78 transcription factor bHLH77 transcription factor bHLH62 transcription factor bHLH77 transcription factor bHLH62 transcription factor bHLH62 transcription factor bHLH77 transcription factor BHLH094 transcription factor BHLH094-like transcription factor bHLH77-like transcription factor bHLH62 transcription factor bHLH62 transcription factor bHLH78-like transcription factor bHLH78-like transcription factor bHLH79 transcription factor bHLH49-like transcription factor bHLH62-like transcription factor bHLH62 transcription factor bHLH62 transcription factor bHLH62 transcription factor bHLH77 transcription factor bHLH78 transcription factor bHLH62 transcription factor bHLH62-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 2
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00100 Steroid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 2
sly00010 Glycolysis / Gluconeogenesis 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00520 Amino sugar and nucleotide sugar metabolism 3
bra01240 Biosynthesis of cofactors 3
bra00040 Pentose and glucuronate interconversions 2
bra00053 Ascorbate and aldarate metabolism 2
bra00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
ppo00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00920 Sulfur metabolism 4
hvu01320 Sulfur cycle 4
hvu00030 Pentose phosphate pathway 2
hvu00480 Glutathione metabolism 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00053 Ascorbate and aldarate metabolism 2
ghi00340 Histidine metabolism 2
ghi00562 Inositol phosphate metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
bna00620 Pyruvate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 2
bna00071 Fatty acid degradation 2
bna00350 Tyrosine metabolism 2
bna00620 Pyruvate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 4
cit00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834912 821950 100812081 100776143 101262401 101268319 4347486 4346087 100216628 100285547 103832202 103874966 100259005 7471175 7488588 25498190 11419890 123063055 123168036 123407905 123445198 107914772 121232156 106364928 106425145 8056168 110433137 102591091 102590121 102618495 102615527 100838672 100836886 107820619 107764585
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