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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125576632   CRS2-associated factor 1, chloroplastic-like 
 bna-r.1   111213632   CRS2-associated factor 2, chloroplastic-like 
 bna-r.1   111211772   CRS2-associated factor 1, chloroplastic-like 
 bna-r.1   106367622   CRS2-associated factor 2, chloroplastic 
 bra-r.6   103836936   CRS2-associated factor 1, mitochondrial 
 bra-r.6   103840763   CRS2-associated factor 2, chloroplastic 
 bra-r.6   108870510   CRS2-associated factor 1, chloroplastic 
 ath-u.5   CAF2   RNA-binding CRS1 / YhbY (CRM) domain-containing protein 
 ath-u.5   CAF1   RNA-binding CRS1 / YhbY (CRM) domain-containing protein 
 ath-u.5   AT4G31010   RNA-binding CRS1 / YhbY (CRM) domain-containing protein 
 ghi-r.1   121216941   CRS2-associated factor 2, mitochondrial 
 ghi-r.1   107954592   CRS2-associated factor 1, mitochondrial 
 ghi-r.1   107909684   CRS2-associated factor 2, chloroplastic 
 cit-r.1   102617663   CRS2-associated factor 1, chloroplastic 
 cit-r.1   127898607   CRS2-associated factor 1, mitochondrial-like 
 cit-r.1   102611191   CRS2-associated factor 2, mitochondrial 
 gma-u.5   100801953   CRS2-associated factor 2, chloroplastic 
 gma-u.5   100805138   CRS2-associated factor 1, chloroplastic 
 gma-u.5   102666790   CRS2-associated factor 1, chloroplastic 
 vvi-u.5   100259402   CRS2-associated factor 1, chloroplastic 
 vvi-u.5   100265780   CRS2-associated factor 2, mitochondrial 
 vvi-u.5   100253421   CRS2-associated factor 2, chloroplastic 
 ppo-u.5   18095966   CRS2-associated factor 2, mitochondrial 
 ppo-u.5   18111101   CRS2-associated factor 1, chloroplastic 
 ppo-u.5   7464885   CRS2-associated factor 1, mitochondrial 
 mtr-u.5   25480604   CRS2-associated factor 2, mitochondrial 
 mtr-u.5   25498880   CRS2-associated factor 1, mitochondrial 
 mtr-u.5   25501489   CRS2-associated factor 2, chloroplastic 
 sly-u.5   101267448   CRS2-associated factor 1 
 sly-u.5   101251009   CRS2-associated factor 2, mitochondrial 
 sly-u.5   101260010   CRS2-associated factor 2, chloroplastic 
 sot-r.1   102600918   CRS2-associated factor 2, chloroplastic 
 sot-r.1   102591046   CRS2-associated factor 1, chloroplastic 
 sot-r.1   102584261   CRS2-associated factor 2, mitochondrial 
 nta-r.1   107818416   CRS2-associated factor 1, mitochondrial 
 nta-r.1   107821292   CRS2-associated factor 2, chloroplastic 
 nta-r.1   107825321   CRS2-associated factor 1, mitochondrial 
 osa-u.5   4344836   CRS2-associated factor 2, mitochondrial-like 
 osa-u.5   4324537   CRS2-associated factor 1, chloroplastic-like 
 osa-u.5   4344787   CRS2-associated factor 1, mitochondrial-like 
 zma-u.5   100272285   CRS2-associated factor 1 mitochondrial 
 zma-u.5   100281604   uncharacterized LOC100281604 
 zma-u.5   542118   CRS2-associated factor 1 
 tae-r.2   123061224   CRS2-associated factor 1, chloroplastic 
 tae-r.2   123078215   CRS2-associated factor 2, chloroplastic 
 tae-r.2   123060386   CRS2-associated factor 1, mitochondrial 
 hvu-r.1   123443584   CRS2-associated factor 1, chloroplastic-like 
 hvu-r.1   123404008   CRS2-associated factor 2, mitochondrial 
 hvu-r.1   123443554   CRS2-associated factor 2, chloroplastic 
 sbi-r.1   8069672   CRS2-associated factor 1, mitochondrial 
 sbi-r.1   8071120   CRS2-associated factor 2, mitochondrial 
 sbi-r.1   8060570   CRS2-associated factor 1, chloroplastic 
 bdi-r.1   100822139   CRS2-associated factor 1, mitochondrial 
 bdi-r.1   100827270   CRS2-associated factor 1, chloroplastic 
 bdi-r.1   100845286   CRS2-associated factor 2, chloroplastic 

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Top 50 coexpressed genes to 125576632 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125576632 (bna-r.1 coexpression data)

CoexMap"125576632"


bnaLOC125576632 | Entrez gene ID : 125576632    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000373 [list] [network] Group II intron splicing  (16 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (3852 genes)  IEA  
Protein XP_048593085.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1,  pero 1,  golg 1  (predict for XP_048593085.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_048593085.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125576632
bna-r.1
for
111213632
bna-r.1
for
111211772
bna-r.1
for
106367622
bra-r.6
for
103836936
bra-r.6
for
103840763
bra-r.6
for
108870510
ath-u.5
for
CAF2
ath-u.5
for
CAF1
ath-u.5
for
AT4G31010
ghi-r.1
for
121216941
ghi-r.1
for
107954592
ghi-r.1
for
107909684
cit-r.1
for
102617663
cit-r.1
for
127898607
cit-r.1
for
102611191
gma-u.5
for
100801953
gma-u.5
for
100805138
gma-u.5
for
102666790
vvi-u.5
for
100259402
vvi-u.5
for
100265780
vvi-u.5
for
100253421
ppo-u.5
for
18095966
ppo-u.5
for
18111101
ppo-u.5
for
7464885
mtr-u.5
for
25480604
mtr-u.5
for
25498880
mtr-u.5
for
25501489
sly-u.5
for
101267448
sly-u.5
for
101251009
sly-u.5
for
101260010
sot-r.1
for
102600918
sot-r.1
for
102591046
sot-r.1
for
102584261
nta-r.1
for
107818416
nta-r.1
for
107821292
nta-r.1
for
107825321
osa-u.5
for
4344836
osa-u.5
for
4324537
osa-u.5
for
4344787
zma-u.5
for
100272285
zma-u.5
for
100281604
zma-u.5
for
542118
tae-r.2
for
123061224
tae-r.2
for
123078215
tae-r.2
for
123060386
hvu-r.1
for
123443584
hvu-r.1
for
123404008
hvu-r.1
for
123443554
sbi-r.1
for
8069672
sbi-r.1
for
8071120
sbi-r.1
for
8060570
bdi-r.1
for
100822139
bdi-r.1
for
100827270
bdi-r.1
for
100845286


Ortholog ID: 945
Species bna bna bna bra bra bra ath ath ath ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi
Symbol LOC111213632 LOC125595455 LOC125592852 LOC103836936 LOC108870510 LOC103851915 CAF2 CAF1 AT4G31010 LOC107909684 LOC107903341 LOC107901273 LOC102617663 LOC102615468 LOC102626028 LOC100805138 LOC102666790 LOC100789092 LOC100259402 LOC100265780 LOC100264400 LOC18095966 LOC18111101 LOC7460776 LOC25480604 LOC25498880 LOC25501489 LOC101251009 LOC101260010 LOC101265922 LOC102591046 LOC102584261 LOC102600530 LOC107825321 LOC107831074 LOC107788616 LOC4344836 LOC4324537 LOC4326994 LOC100272285 LOC100281604 LOC542118 LOC123069741 LOC123143727 LOC123132192 LOC123443584 LOC123443554 LOC123442912 LOC8069672 LOC8060570 LOC8075295 LOC100822139 LOC100827270 LOC100842971
Function* CRS2-associated factor 2, chloroplastic-like CRS2-associated factor 2, mitochondrial-like CRS2-associated factor 1, mitochondrial-like CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial RNA-binding CRS1 / YhbY (CRM) domain-containing protein RNA-binding CRS1 / YhbY (CRM) domain-containing protein RNA-binding CRS1 / YhbY (CRM) domain-containing protein CRS2-associated factor 2, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, mitochondrial CRS2-associated factor 2, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, mitochondrial CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, mitochondrial CRS2-associated factor 2, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 2, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, mitochondrial CRS2-associated factor 2, mitochondrial CRS2-associated factor 2, mitochondrial CRS2-associated factor 2, mitochondrial-like CRS2-associated factor 1, chloroplastic-like CRS2-associated factor 2, chloroplastic CRS2-associated factor 1 mitochondrial uncharacterized LOC100281604 CRS2-associated factor 1 CRS2-associated factor 2, chloroplastic CRS2-associated factor 2, mitochondrial CRS2-associated factor 2, mitochondrial CRS2-associated factor 1, chloroplastic-like CRS2-associated factor 2, chloroplastic CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, chloroplastic CRS2-associated factor 1, mitochondrial CRS2-associated factor 1, chloroplastic CRS2-associated factor 2, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04016 MAPK signaling pathway - plant 3
bna04075 Plant hormone signal transduction 3
bna00010 Glycolysis / Gluconeogenesis 2
bna00030 Pentose phosphate pathway 2
bna00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00270 Cysteine and methionine metabolism 5
bra01230 Biosynthesis of amino acids 4
bra00966 Glucosinolate biosynthesis 3
bra01210 2-Oxocarboxylic acid metabolism 3
bra00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
ghi00430 Taurine and hypotaurine metabolism 2
ghi00460 Cyanoamino acid metabolism 2
ghi00480 Glutathione metabolism 2
ghi00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00300 Lysine biosynthesis 2
cit01230 Biosynthesis of amino acids 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 5
vvi03040 Spliceosome 4
vvi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 2
ppo00190 Oxidative phosphorylation 2
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00770 Pantothenate and CoA biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03020 RNA polymerase 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00564 Glycerophospholipid metabolism 3
bdi04070 Phosphatidylinositol signaling system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 111213632 125595455 125592852 103836936 108870510 103851915 838948 816521 829228 107909684 107903341 107901273 102617663 102615468 102626028 100805138 102666790 100789092 100259402 100265780 100264400 18095966 18111101 7460776 25480604 25498880 25501489 101251009 101260010 101265922 102591046 102584261 102600530 107825321 107831074 107788616 4344836 4324537 4326994 100272285 100281604 542118 123069741 123143727 123132192 123443584 123443554 123442912 8069672 8060570 8075295 100822139 100827270 100842971
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