ATTED-II : GeneCoexpression result

Species	Gene	Description
bna-r.1	125576633	probable RNA-dependent RNA polymerase 5
bna-r.1	106357580	probable RNA-dependent RNA polymerase 5
bra-r.6	103845422	probable RNA-dependent RNA polymerase 3
bra-r.6	103828268	probable RNA-dependent RNA polymerase 5
ath-u.5	AT2G19910	RNA-dependent RNA polymerase family protein
ath-u.5	AT2G19920	RNA-dependent RNA polymerase family protein
ath-u.5	AT2G19930	RNA-dependent RNA polymerase family protein
ghi-r.1	107940156	probable RNA-dependent RNA polymerase 5
ghi-r.1	107932268	probable RNA-dependent RNA polymerase 5
cit-r.1	102621864	probable RNA-dependent RNA polymerase 3
gma-u.5	RDR3	RNA-dependent RNA polymerase
vvi-u.5	100260997	probable RNA-dependent RNA polymerase 5
ppo-u.5	18100462	probable RNA-dependent RNA polymerase 5
ppo-u.5	18100983	probable RNA-dependent RNA polymerase 5
mtr-u.5	25496960	probable RNA-dependent RNA polymerase 5
mtr-u.5	11411705	probable RNA-dependent RNA polymerase 5
sly-u.5	Ty-1/Ty-3	RNA-dependent RNA polymerase
sly-u.5	101257834	probable RNA-dependent RNA polymerase 5
sot-r.1	102602961	probable RNA-dependent RNA polymerase 5
sot-r.1	102579148	probable RNA-dependent RNA polymerase 5
nta-r.1	107778920	putative RNA-dependent RNA polymerase 3
nta-r.1	107774542	putative RNA-dependent RNA polymerase 5
nta-r.1	107828996	putative RNA-dependent RNA polymerase 5
osa-u.5	4327336	probable RNA-dependent RNA polymerase 4
osa-u.5	4327335	probable RNA-dependent RNA polymerase 3
zma-u.5	103646829	probable RNA-dependent RNA polymerase 3
zma-u.5	100384503	uncharacterized LOC100384503
tae-r.2	123060583	probable RNA-dependent RNA polymerase 3
tae-r.2	123060582	probable RNA-dependent RNA polymerase 3
sbi-r.1	8084336	probable RNA-dependent RNA polymerase 3
sbi-r.1	8066011	probable RNA-dependent RNA polymerase 3
cre-r.1	CHLRE_03g206950v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0030422 [list] [network] siRNA processing

(39 genes)

IEA

GO CC

GO:0031380 [list] [network] nuclear RNA-directed RNA polymerase complex

(20 genes)

IEA

GO MF

GO:0003968 [list] [network] RNA-directed RNA polymerase activity

(20 genes)

IEA

Protein

XP_048593087.1 [sequence] [blastp]
XP_048593088.1 [sequence] [blastp]
XP_048593089.1 [sequence] [blastp]
XP_048593090.1 [sequence] [blastp]
XP_048593091.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 4, chlo 1, cysk 1	(predict for XP_048593087.1)
cyto 5, nucl 4, chlo 1, cysk 1	(predict for XP_048593088.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for XP_048593089.1)
cyto 5, nucl 4, chlo 1, cysk 1	(predict for XP_048593090.1)
nucl 4, cyto 4, cyto_nucl 4	(predict for XP_048593091.1)

Subcellular
localization
TargetP

other 7	(predict for XP_048593087.1)
other 8	(predict for XP_048593088.1)
other 7	(predict for XP_048593089.1)
other 7	(predict for XP_048593090.1)
other 8	(predict for XP_048593091.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125576633	bna-r.1 for 106357580	bra-r.6 for 103845422	bra-r.6 for 103828268	ath-u.5 for AT2G19910	ath-u.5 for AT2G19920	ath-u.5 for AT2G19930	ghi-r.1 for 107940156	ghi-r.1 for 107932268	cit-r.1 for 102621864	gma-u.5 for RDR3	vvi-u.5 for 100260997	ppo-u.5 for 18100462	ppo-u.5 for 18100983	mtr-u.5 for 25496960	mtr-u.5 for 11411705	sly-u.5 for Ty-1/Ty-3	sly-u.5 for 101257834	sot-r.1 for 102602961	sot-r.1 for 102579148	nta-r.1 for 107778920	nta-r.1 for 107774542	nta-r.1 for 107828996	osa-u.5 for 4327336	osa-u.5 for 4327335	zma-u.5 for 103646829	zma-u.5 for 100384503	tae-r.2 for 123060583	tae-r.2 for 123060582	sbi-r.1 for 8084336	sbi-r.1 for 8066011	cre-r.1 for CHLRE_03g206950v5

Ortholog

Ortholog ID: 2612

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

sbi

cre

Symbol

RDR3

Function^*