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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103852959   protein SHI RELATED SEQUENCE 5 
 bra-r.6   103830646   protein SHI RELATED SEQUENCE 5 
 bra-r.6   103862463   protein SHI RELATED SEQUENCE 2 
 ath-u.5   SRS5   SHI-related sequence 5 
 ghi-r.1   107910209   protein SHI RELATED SEQUENCE 5 
 ghi-r.1   107909432   protein SHI RELATED SEQUENCE 1 
 cit-r.1   102608794   protein SHI RELATED SEQUENCE 5 
 cit-r.1   102626346   protein SHI RELATED SEQUENCE 1 
 gma-u.5   100781981   protein EXPRESSION OF TERPENOIDS 1 
 gma-u.5   100789129   protein EXPRESSION OF TERPENOIDS 1 
 vvi-u.5   100260953   protein EXPRESSION OF TERPENOIDS 1 
 vvi-u.5   100250664   protein SHI RELATED SEQUENCE 1 
 mtr-u.5   25501609   protein SHI RELATED SEQUENCE 1 
 mtr-u.5   11419224   protein EXPRESSION OF TERPENOIDS 1 
 sly-u.5   101250986   protein EXPRESSION OF TERPENOIDS 1-like 
 sly-u.5   101246779   protein EXPRESSION OF TERPENOIDS 1-like 
 sot-r.1   102600089   protein SHI RELATED SEQUENCE 1-like 
 sot-r.1   102581821   protein SHI RELATED SEQUENCE 1-like 
 nta-r.1   107763062   protein EXPRESSION OF TERPENOIDS 1-like 
 nta-r.1   107766265   protein EXPRESSION OF TERPENOIDS 1-like 
 osa-u.5   4347669   protein SHORT INTERNODES 1-like 
 osa-u.5   4342046   protein SHORT INTERNODES 1-like 
 osa-u.5   9269394   protein SHORT INTERNODES 1-like 
 zma-u.5   103626446   protein SHI RELATED SEQUENCE 1 
 zma-u.5   103629573   protein SHI RELATED SEQUENCE 1 
 zma-u.5   100191342   uncharacterized LOC100191342 
 tae-r.2   123167624   protein SHI RELATED SEQUENCE 1 
 tae-r.2   123160691   protein SHI RELATED SEQUENCE 1 
 tae-r.2   123152431   protein SHI RELATED SEQUENCE 1 
 sbi-r.1   8065614   protein SHI RELATED SEQUENCE 1 
 sbi-r.1   110432445   protein SHI RELATED SEQUENCE 1-like 
 bdi-r.1   100833246   protein SHI RELATED SEQUENCE 1 
 bdi-r.1   100836378   protein SHI RELATED SEQUENCE 1 
 bdi-r.1   100837710   protein SHI RELATED SEQUENCE 2 

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Top 50 coexpressed genes to 103852959 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103852959 (bra-r.6 coexpression data)

CoexMap"125576699"


bnaLOC125576699 | Entrez gene ID : 125576699    
Species bra ath ghi cit gma vvi mtr sly sot nta osa zma tae sbi bdi bna hvu ppo cre
Paralog 3 1 2 2 2 2 2 2 2 2 3 3 3 2 3 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (935 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (3791 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048593227.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_048593227.1)
Subcellular
localization
TargetP
other 8  (predict for XP_048593227.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103852959
bra-r.6
for
103830646
bra-r.6
for
103862463
ath-u.5
for
SRS5
ghi-r.1
for
107910209
ghi-r.1
for
107909432
cit-r.1
for
102608794
cit-r.1
for
102626346
gma-u.5
for
100781981
gma-u.5
for
100789129
vvi-u.5
for
100260953
vvi-u.5
for
100250664
mtr-u.5
for
25501609
mtr-u.5
for
11419224
sly-u.5
for
101250986
sly-u.5
for
101246779
sot-r.1
for
102600089
sot-r.1
for
102581821
nta-r.1
for
107763062
nta-r.1
for
107766265
osa-u.5
for
4347669
osa-u.5
for
4342046
osa-u.5
for
9269394
zma-u.5
for
103626446
zma-u.5
for
103629573
zma-u.5
for
100191342
tae-r.2
for
123167624
tae-r.2
for
123160691
tae-r.2
for
123152431
sbi-r.1
for
8065614
sbi-r.1
for
110432445
bdi-r.1
for
100833246
bdi-r.1
for
100836378
bdi-r.1
for
100837710


Ortholog ID: 445
Species bna bra bra ath ath ghi ghi ghi cit cit gma vvi vvi mtr mtr sly sly sot nta nta nta osa osa osa zma zma zma tae sbi sbi bdi bdi bdi
Symbol LOC106356513 LOC103841026 SRS7 SRS5 STY2 LOC107896870 LOC107917109 LOC107936562 LOC102608794 LOC102626346 LOC100797973 LOC100260953 LOC100250664 LOC11419224 LOC11439633 LOC101250986 LOC101246779 LOC102581821 LOC107787046 LOC107799063 LOC107807266 LOC4347669 LOC4342046 LOC9269394 LOC103629573 LOC100191342 LOC100502392 LOC123152431 LOC8065614 LOC110432445 LOC100833246 LOC100836378 LOC100837710
Function* protein SHORT INTERNODES protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 7 SHI-related sequence 5 Lateral root primordium (LRP) protein-like protein protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 5 protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 5 protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 1 protein EXPRESSION OF TERPENOIDS 1 protein SHI RELATED SEQUENCE 1 protein EXPRESSION OF TERPENOIDS 1 protein SHI RELATED SEQUENCE 3 protein EXPRESSION OF TERPENOIDS 1-like protein EXPRESSION OF TERPENOIDS 1-like protein SHI RELATED SEQUENCE 1-like protein SHI RELATED SEQUENCE 1-like protein EXPRESSION OF TERPENOIDS 1-like protein EXPRESSION OF TERPENOIDS 1-like protein SHORT INTERNODES 1-like protein SHORT INTERNODES 1-like protein SHORT INTERNODES 1-like protein SHI RELATED SEQUENCE 1 uncharacterized LOC100191342 uncharacterized LOC100502392 protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 1-like protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 1 protein SHI RELATED SEQUENCE 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 2
bra03030 DNA replication 2
bra03440 Homologous recombination 2
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00052 Galactose metabolism 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr02010 ABC transporters 2
mtr04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00460 Cyanoamino acid metabolism 3
sot00500 Starch and sucrose metabolism 3
sot00999 Biosynthesis of various plant secondary metabolites 3
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 4
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106356513 103841026 103872782 843888 829783 107896870 107917109 107936562 102608794 102626346 100797973 100260953 100250664 11419224 11439633 101250986 101246779 102581821 107787046 107799063 107807266 4347669 4342046 9269394 103629573 100191342 100502392 123152431 8065614 110432445 100833246 100836378 100837710
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