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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125590708   probable RNA-dependent RNA polymerase 5 
 ath-u.5   AT2G19910   RNA-dependent RNA polymerase family protein 
 ath-u.5   AT2G19920   RNA-dependent RNA polymerase family protein 
 ath-u.5   AT2G19930   RNA-dependent RNA polymerase family protein 
 gma-u.5   RDR3   RNA-dependent RNA polymerase 
 vvi-u.5   100260997   probable RNA-dependent RNA polymerase 5 
 ppo-u.5   18100462   probable RNA-dependent RNA polymerase 5 
 ppo-u.5   18100983   probable RNA-dependent RNA polymerase 5 
 mtr-u.5   25496960   probable RNA-dependent RNA polymerase 5 
 mtr-u.5   11411705   probable RNA-dependent RNA polymerase 5 
 sly-u.5   Ty-1/Ty-3   RNA-dependent RNA polymerase 
 sly-u.5   101257834   probable RNA-dependent RNA polymerase 5 
 osa-u.5   4327336   probable RNA-dependent RNA polymerase 4 
 osa-u.5   4327335   probable RNA-dependent RNA polymerase 3 
 zma-u.5   103646829   probable RNA-dependent RNA polymerase 3 
 zma-u.5   100384503   uncharacterized LOC100384503 

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Top 50 coexpressed genes to 125590708 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125590708 (bna-r.1 coexpression data)

CoexMap"125590708"


bnaLOC125590708 | Entrez gene ID : 125590708    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 3 1 1 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030422 [list] [network] siRNA processing  (39 genes)  IEA  
GO CC
GO:0031380 [list] [network] nuclear RNA-directed RNA polymerase complex  (20 genes)  IEA  
GO MF
GO:0003968 [list] [network] RNA-directed RNA polymerase activity  (20 genes)  IEA  
Protein XP_048620373.1 [sequence] [blastp]
XP_048620374.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 4  (predict for XP_048620373.1)
chlo 4,  cyto 4,  nucl 1,  mito 1  (predict for XP_048620374.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_048620373.1)
other 3,  mito 3  (predict for XP_048620374.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125590708

.
ath-u.5
for
AT2G19910

.
ath-u.5
for
AT2G19920

.
ath-u.5
for
AT2G19930

.
gma-u.5
for
RDR3

.
vvi-u.5
for
100260997

.
ppo-u.5
for
18100462

.
ppo-u.5
for
18100983

.
mtr-u.5
for
25496960

.
mtr-u.5
for
11411705

.
sly-u.5
for
Ty-1/Ty-3

.
sly-u.5
for
101257834

.
osa-u.5
for
4327336

.
osa-u.5
for
4327335

.
zma-u.5
for
103646829

.
zma-u.5
for
100384503

.


Ortholog ID: 2612
Species ath ath gma sly sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae ghi ghi bna cre sbi sbi sot sot cit nta nta
Symbol AT2G19910 AT2G19920 RDR3 Ty-1/Ty-3 LOC101257834 LOC4327335 LOC4327336 LOC103646829 LOC100384503 LOC103828268 LOC103845422 LOC100260997 LOC18100462 LOC18100983 LOC25496960 LOC123069192 LOC123069194 LOC107940156 LOC107932268 LOC106357580 CHLRE_03g206950v5 LOC8084336 LOC8066011 LOC102579148 LOC102602961 LOC102621864 LOC107828996 LOC107774542
Function* RNA-dependent RNA polymerase family protein RNA-dependent RNA polymerase family protein RNA-dependent RNA polymerase RNA-dependent RNA polymerase probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 4 probable RNA-dependent RNA polymerase 3 uncharacterized LOC100384503 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 uncharacterized protein probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 3 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 5 probable RNA-dependent RNA polymerase 3 putative RNA-dependent RNA polymerase 5 putative RNA-dependent RNA polymerase 5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma04141 Protein processing in endoplasmic reticulum 3
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 9
sot04075 Plant hormone signal transduction 8
sot01200 Carbon metabolism 3
sot00270 Cysteine and methionine metabolism 2
sot00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816510 816511 100801632 101263417 101257834 4327335 4327336 103646829 100384503 103828268 103845422 100260997 18100462 18100983 25496960 123069192 123069194 107940156 107932268 106357580 5718835 8084336 8066011 102579148 102602961 102621864 107828996 107774542
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