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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125598544   pre-mRNA cleavage factor Im 25 kDa subunit 2-like 
 ath-u.5   AT4G25550   Cleavage/polyadenylation specificity factor, 25kDa subunit 
 gma-u.5   100306068   uncharacterized LOC100306068 
 gma-u.5   100790200   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 vvi-u.5   100266110   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 vvi-u.5   100261950   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 ppo-u.5   7454504   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 mtr-u.5   25485080   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sly-u.5   101268710   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sly-u.5   101268418   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 sly-u.5   101249048   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 osa-u.5   4337444   pre-mRNA cleavage factor Im 25 kDa subunit 2 
 zma-u.5   100282369   uncharacterized LOC100282369 
 zma-u.5   100273812   uncharacterized LOC100273812 

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Top 50 coexpressed genes to 125598544 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125598544 (bna-r.1 coexpression data)

CoexMap"125598544"


bnaLOC125598544 | Entrez gene ID : 125598544    
Species bna ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae ghi
Paralog 1 1 2 2 1 1 3 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03015 [list] [network] mRNA surveillance pathway (420 genes)
GO BP
GO CC
GO:0005849 [list] [network] mRNA cleavage factor complex  (47 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (918 genes)  IEA  
Protein XP_048628521.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  mito 1,  nucl 1,  extr 1,  pero 1,  chlo_mito 1,  cyto_mito 1,  mito_plas 1  (predict for XP_048628521.1)
Subcellular
localization
TargetP
other 7  (predict for XP_048628521.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125598544

.
ath-u.5
for
AT4G25550

.
gma-u.5
for
100306068

.
gma-u.5
for
100790200

.
vvi-u.5
for
100266110

.
vvi-u.5
for
100261950

.
ppo-u.5
for
7454504

.
mtr-u.5
for
25485080

.
sly-u.5
for
101268710

.
sly-u.5
for
101268418

.
sly-u.5
for
101249048

.
osa-u.5
for
4337444

.
zma-u.5
for
100282369

.
zma-u.5
for
100273812

.


Ortholog ID: 3829
Species ath gma gma sly sly osa zma zma bra bra vvi vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol AT4G25550 LOC100306068 LOC100790200 LOC101249048 LOC101268418 LOC4337444 LOC100282369 LOC100273812 LOC103863315 LOC103861569 LOC100261950 LOC100266110 LOC7454504 LOC25485080 LOC123064593 LOC123047512 LOC123448653 LOC123428491 LOC107890737 LOC107917707 LOC106426406 LOC125598544 CHLRE_10g462700v5 LOC8076486 LOC102584072 LOC102597325 LOC102607311 LOC100833966 LOC100834278 LOC107811853 LOC107774067
Function* Cleavage/polyadenylation specificity factor, 25kDa subunit uncharacterized LOC100306068 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 uncharacterized LOC100282369 uncharacterized LOC100273812 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2-like uncharacterized protein pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2-like pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2 pre-mRNA cleavage factor Im 25 kDa subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 11
ath03040 Spliceosome 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 12
gma03015 mRNA surveillance pathway 2
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 4
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03082 ATP-dependent chromatin remodeling 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 3
zma03015 mRNA surveillance pathway 2
zma03083 Polycomb repressive complex 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03015 mRNA surveillance pathway 2
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03040 Spliceosome 4
bra03015 mRNA surveillance pathway 3
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 6
vvi04141 Protein processing in endoplasmic reticulum 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi00620 Pyruvate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00270 Cysteine and methionine metabolism 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 9
tae00300 Lysine biosynthesis 8
tae03015 mRNA surveillance pathway 4
tae00470 D-Amino acid metabolism 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04120 Ubiquitin mediated proteolysis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 16
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00260 Glycine, serine and threonine metabolism 2
cre00270 Cysteine and methionine metabolism 2
cre01200 Carbon metabolism 2
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 4
sbi00510 N-Glycan biosynthesis 3
sbi00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 5
bdi03420 Nucleotide excision repair 4
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi03015 mRNA surveillance pathway 2
bdi03420 Nucleotide excision repair 2
bdi03040 Spliceosome 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03015 mRNA surveillance pathway 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 7
nta00010 Glycolysis / Gluconeogenesis 4
nta00020 Citrate cycle (TCA cycle) 4
nta00260 Glycine, serine and threonine metabolism 4
nta00280 Valine, leucine and isoleucine degradation 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828660 100306068 100790200 101249048 101268418 4337444 100282369 100273812 103863315 103861569 100261950 100266110 7454504 25485080 123064593 123047512 123448653 123428491 107890737 107917707 106426406 125598544 5724162 8076486 102584072 102597325 102607311 100833966 100834278 107811853 107774067
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