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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125599502   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like 
 ath-u.5   LSH3   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 ath-u.5   LSH5   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) 
 gma-u.5   100803605   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 gma-u.5   100806134   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 vvi-u.5   100266079   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 vvi-u.5   104879291   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 vvi-u.5   100244642   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 ppo-u.5   18095487   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 
 ppo-u.5   7458006   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 ppo-u.5   7458242   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 mtr-u.5   25484251   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 mtr-u.5   25485963   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 
 sly-u.5   101253723   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 
 sly-u.5   101252299   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like 
 sly-u.5   TFAM2   protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 
 osa-u.5   4338491   protein G1-like9 
 osa-u.5   107278201   protein G1-like8 
 osa-u.5   9266624   protein G1-like5 
 zma-u.5   100274783   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100275232   putative protein of unknown function (DUF640) domain family protein 
 zma-u.5   100278049   uncharacterized LOC100278049 

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Top 50 coexpressed genes to 125599502 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125599502 (bna-r.1 coexpression data)

CoexMap"125599502"


bnaLOC125599502 | Entrez gene ID : 125599502    
Species bna ath gma vvi ppo mtr sly osa zma bdi hvu bra cit sbi ghi sot nta cre tae
Paralog 1 2 2 3 3 2 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009299 [list] [network] mRNA transcription  (62 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (379 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
Protein XP_048628738.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3,  cyto_nucl 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_048628738.1)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for XP_048628738.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125599502
ath-u.5
for
LSH3
ath-u.5
for
LSH5
gma-u.5
for
100803605
gma-u.5
for
100806134
vvi-u.5
for
100266079
vvi-u.5
for
104879291
vvi-u.5
for
100244642
ppo-u.5
for
18095487
ppo-u.5
for
7458006
ppo-u.5
for
7458242
mtr-u.5
for
25484251
mtr-u.5
for
25485963
sly-u.5
for
101253723
sly-u.5
for
101252299
sly-u.5
for
TFAM2
osa-u.5
for
4338491
osa-u.5
for
107278201
osa-u.5
for
9266624
zma-u.5
for
100274783
zma-u.5
for
100275232
zma-u.5
for
100278049


Ortholog ID: 68
Species bna bna bra bra ath ath ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae hvu hvu sbi sbi bdi bdi
Symbol LOC125602819 LOC106391304 LOC103874577 LOC103828755 LSH3 LSH6 LOC107958534 LOC107936786 LOC102606613 LOC102612277 LOC102663941 LOC100803605 LOC100260366 LOC100249172 LOC7460096 LOC7467540 LOC11408401 LOC11407427 LOC101261831 LOC101256738 LOC102600485 LOC102583639 LOC107766017 LOC107794180 LOC4336401 LOC107278610 LOC100304411 LOC100381724 LOC123182342 LOC123402509 LOC123444893 LOC8054276 LOC8072493 LOC100822544 LOC100821276
Function* protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 hypothetical protein protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 protein G1-like4 protein G1-like7 putative protein of unknown function (DUF640) domain family protein putative protein of unknown function (DUF640) domain family protein protein G1-like7 protein G1-like3 protein G1-like8 protein G1-like4 protein G1-like4 protein G1-like1 protein G1-like4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 6
ath04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
cit04141 Protein processing in endoplasmic reticulum 2
cit03040 Spliceosome 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00061 Fatty acid biosynthesis 3
cit01040 Biosynthesis of unsaturated fatty acids 3
cit01212 Fatty acid metabolism 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 3
vvi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
vvi00941 Flavonoid biosynthesis 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 125602819 106391304 103874577 103828755 817672 837220 107958534 107936786 102606613 102612277 102663941 100803605 100260366 100249172 7460096 7467540 11408401 11407427 101261831 101256738 102600485 102583639 107766017 107794180 4336401 107278610 100304411 100381724 123182342 123402509 123444893 8054276 8072493 100822544 100821276
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