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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   rpoC1   RNA polymerase beta' subunit 
 gma-u.5   rpoC1   RNA polymerase beta' chain 
 vvi-u.5   rpoC1   RNA polymerase beta' chain 
 ppo-u.5   rpoC1   RNA polymerase beta' subunit 
 mtr-u.5   120580069   DNA-directed RNA polymerase subunit beta' 
 mtr-u.5   rpoC1   RNA polymerase beta' subunit 
 mtr-u.5   120579359   DNA-directed RNA polymerase subunit beta' 
 sly-u.5   rpoC1   RNA polymerase beta subunit 
 osa-u.5   rpoC1   RNA polymerase beta' subunit 
 zma-u.5   118475931   DNA-directed RNA polymerase subunit beta' 

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Top 50 coexpressed genes to rpoC1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rpoC1 (ath-u.5 coexpression data)

CoexMap"125600282"


bnaLOC125600282 | Entrez gene ID : 125600282    
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 3 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bna03020 [list] [network] RNA polymerase (161 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (740 genes)  IEA  
GO CC
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (117 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (6522 genes)  IEA  
Protein XP_048629049.1 [sequence] [blastp]
Subcellular
localization
wolf
pero 4,  chlo 4,  nucl 1,  cyto 1,  E.R. 1,  cyto_nucl 1,  cyto_E.R. 1  (predict for XP_048629049.1)
Subcellular
localization
TargetP
other 6,  chlo 3  (predict for XP_048629049.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ath-u.5
for
rpoC1

.
gma-u.5
for
rpoC1

.
vvi-u.5
for
rpoC1

.
ppo-u.5
for
rpoC1

.
mtr-u.5
for
120580069

.
mtr-u.5
for
rpoC1

.
mtr-u.5
for
120579359

.
sly-u.5
for
rpoC1

.
osa-u.5
for
rpoC1

.
zma-u.5
for
118475931

.


Ortholog ID: 3178
Species ath gma sly osa zma bra vvi ppo mtr mtr ghi ghi bna sbi sot cit bdi nta
Symbol rpoC1 rpoC1 rpoC1 rpoC1 LOC118475931 LOC117131035 rpoC1 rpoC1 LOC120579358 LOC120579359 rpoC1 LOC121220050 LOC125604864 rpoC1 rpoC1 rpoC1 rpoC1 rpoC1
Function* RNA polymerase beta' subunit RNA polymerase beta' chain RNA polymerase beta subunit RNA polymerase beta' subunit DNA-directed RNA polymerase subunit beta' DNA-directed RNA polymerase subunit beta' RNA polymerase beta' chain RNA polymerase beta' subunit DNA-directed RNA polymerase subunit beta' DNA-directed RNA polymerase subunit beta' RNA polymerase beta' chain DNA-directed RNA polymerase subunit beta'-like DNA-directed RNA polymerase subunit beta' RNA polymerase beta' subunit RNA polymerase beta' subunit RNA polymerase beta' subunit RNA polymerase beta' subunit RNA polymerase beta' chain
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
ath03020 RNA polymerase 3
ath00190 Oxidative phosphorylation 3
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 8
gma03010 Ribosome 6
gma03020 RNA polymerase 4
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 7
sly03020 RNA polymerase 3
sly03010 Ribosome 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa03010 Ribosome 6
osa00190 Oxidative phosphorylation 4
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 7
zma00190 Oxidative phosphorylation 7
zma03020 RNA polymerase 6
zma03010 Ribosome 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
vvi00190 Oxidative phosphorylation 3
vvi03020 RNA polymerase 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03020 RNA polymerase 5
ppo00195 Photosynthesis 3
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 9
sbi03020 RNA polymerase 4
sbi00195 Photosynthesis 4
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 5
sot03010 Ribosome 4
sot03020 RNA polymerase 3
sot00190 Oxidative phosphorylation 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 8
cit00190 Oxidative phosphorylation 5
cit03020 RNA polymerase 3
cit01200 Carbon metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 7
bdi00190 Oxidative phosphorylation 6
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 6
nta00190 Oxidative phosphorylation 3
nta03020 RNA polymerase 3
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844784 3989292 3950486 3131433 118475931 117131035 4025098 4929644 120579358 120579359 3989196 121220050 125604864 4549133 4099931 4271234 6439871 800521
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