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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125576686   MADS-box transcription factor ANR1 
 bna-r.1   111201498   agamous-like MADS-box protein AGL16 
 bna-r.1   106410172   MADS-box transcription factor ANR1 
 bra-r.6   103842472   agamous-like MADS-box protein AGL17 
 bra-r.6   103840485   agamous-like MADS-box protein AGL16 
 ath-u.5   AGL21   AGAMOUS-like 21 
 ghi-r.1   107886991   MADS-box transcription factor ANR1 
 cit-r.1   102630220   MADS-box transcription factor 23-like 
 mtr-u.5   11407839   agamous-like MADS-box protein AGL21 
 mtr-u.5   11418839   MADS-box transcription factor 23 
 mtr-u.5   11423803   MADS-box transcription factor 23 
 sly-u.5   101262808   MADS-box transcription factor 23 
 sot-r.1   102582884   MADS-box transcription factor 23-like 
 sot-r.1   102593715   MADS-box transcription factor 23-like 
 sot-r.1   102591829   MADS-box transcription factor 23 
 nta-r.1   107811079   MADS-box transcription factor 23-like 
 nta-r.1   107825118   MADS-box transcription factor 23-like 
 nta-r.1   107768695   MADS-box transcription factor 23 
 osa-u.5   107276913   MADS-box transcription factor 23-like 
 osa-u.5   4330621   MADS-box transcription factor 57-like 
 osa-u.5   4335427   MADS-box transcription factor 25-like 
 zma-u.5   103643284   MADS-box transcription factor 23 
 zma-u.5   103646360   MADS-box transcription factor 27 
 tae-r.2   123045674   MADS-box transcription factor 27 
 hvu-r.1   123426922   MADS-box transcription factor 27-like 
 sbi-r.1   8057478   MADS-box transcription factor 27 
 bdi-r.1   100840222   MADS-box transcription factor 57-like 
 bdi-r.1   100823221   MADS-box transcription factor 27 

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Top 50 coexpressed genes to 125576686 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125576686 (bna-r.1 coexpression data)

CoexMap"125605089"


bnaLOC125605089 | Entrez gene ID : 125605089    
Species bna bra ath ghi cit mtr sly sot nta osa zma tae hvu sbi bdi gma ppo cre vvi
Paralog 3 2 1 1 1 3 1 3 3 3 2 1 1 1 2 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (509 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (9971 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (792 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (968 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
Protein XP_048631052.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  mito 1,  pero 1,  golg_plas 1,  cyto_pero 1  (predict for XP_048631052.1)
Subcellular
localization
TargetP
other 9,  mito 4  (predict for XP_048631052.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125576686
bna-r.1
for
111201498
bna-r.1
for
106410172
bra-r.6
for
103842472
bra-r.6
for
103840485
ath-u.5
for
AGL21
ghi-r.1
for
107886991
cit-r.1
for
102630220
mtr-u.5
for
11407839
mtr-u.5
for
11418839
mtr-u.5
for
11423803
sly-u.5
for
101262808
sot-r.1
for
102582884
sot-r.1
for
102593715
sot-r.1
for
102591829
nta-r.1
for
107811079
nta-r.1
for
107825118
nta-r.1
for
107768695
osa-u.5
for
107276913
osa-u.5
for
4330621
osa-u.5
for
4335427
zma-u.5
for
103643284
zma-u.5
for
103646360
tae-r.2
for
123045674
hvu-r.1
for
123426922
sbi-r.1
for
8057478
bdi-r.1
for
100840222
bdi-r.1
for
100823221


Ortholog ID: 554
Species bna bna bra bra ath ghi cit cit gma ppo mtr mtr mtr sot sot sot nta nta nta osa osa zma zma tae hvu sbi sbi bdi bdi
Symbol LOC106436609 LOC106390859 LOC103862329 LOC103856547 AGL16 LOC121202993 LOC102630220 LOC102613302 LOC100812413 LOC7461842 LOC11407839 LOC11418839 LOC11423803 LOC102582884 LOC102593715 LOC102591829 LOC107811079 LOC107770946 LOC107798569 LOC4335427 LOC4329771 LOC103655506 LOC541764 LOC100136966 LOC123426922 LOC8057478 LOC110434910 LOC100840222 LOC100823221
Function* agamous-like MADS-box protein AGL21 agamous-like MADS-box protein AGL16 agamous-like MADS-box protein AGL16 agamous-like MADS-box protein AGL21 AGAMOUS-like 16 MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 23 agamous-like MADS-box protein AGL21 MADS-box transcription factor 23 MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 23-like MADS-box transcription factor 23-like MADS-box transcription factor 23 MADS-box transcription factor 25-like MADS-box transcription factor 27-like MADS-box transcription factor 27 MADS2 MADS-box transcription factor 27 MADS-box transcription factor 27-like MADS-box transcription factor 27 MADS-box transcription factor 57-like MADS-box transcription factor 57-like MADS-box transcription factor 27
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 8
bna00920 Sulfur metabolism 8
bna01200 Carbon metabolism 8
bna01230 Biosynthesis of amino acids 8
bna01320 Sulfur cycle 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 4
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 2
mtr00941 Flavonoid biosynthesis 2
mtr00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04016 MAPK signaling pathway - plant 4
mtr04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
zma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 8
bdi03040 Spliceosome 3
bdi04144 Endocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106436609 106390859 103862329 103856547 824890 121202993 102630220 102613302 100812413 7461842 11407839 11418839 11423803 102582884 102593715 102591829 107811079 107770946 107798569 4335427 4329771 103655506 541764 100136966 123426922 8057478 110434910 100840222 100823221
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