ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7462501	transcription termination factor MTERF4, chloroplastic
ppo-u.5	18109306	uncharacterized LOC18109306
ppo-u.5	7476812	uncharacterized LOC7476812
gma-u.5	100792944	uncharacterized LOC100792944
gma-u.5	100806386	uncharacterized LOC100806386
gma-u.5	106796317	uncharacterized LOC106796317
mtr-u.5	25501780	uncharacterized LOC25501780
mtr-u.5	25501781	transcription termination factor MTERF5, chloroplastic
mtr-u.5	25488108	uncharacterized LOC25488108
ath-u.5	AT5G07900	Mitochondrial transcription termination factor family protein
ath-u.5	AT5G64950	Mitochondrial transcription termination factor family protein
ath-u.5	AT1G21150	Mitochondrial transcription termination factor family protein
bra-r.6	103862768	uncharacterized LOC103862768
bra-r.6	103858260	transcription termination factor MTERF8, chloroplastic
vvi-u.5	100241175	transcription termination factor MTERF9, chloroplastic-like
vvi-u.5	100245862	transcription termination factor MTERF5, chloroplastic
ghi-r.1	107916704	uncharacterized LOC107916704
ghi-r.1	107895242	transcription termination factor MTERF5, chloroplastic
ghi-r.1	107908420	transcription termination factor MTERF6, chloroplastic/mitochondrial
bna-r.1	BNAC01G30050D	transcription termination factor MTERF2, chloroplastic
bna-r.1	106365769	transcription termination factor MTERF4, chloroplastic-like
bna-r.1	106418515	transcription termination factor MTERF2, chloroplastic-like
cit-r.1	102610867	uncharacterized LOC102610867
cit-r.1	102611574	transcription termination factor MTERF5, chloroplastic-like
cit-r.1	102628676	transcription termination factor MTERF4, chloroplastic-like
sly-u.5	101249514	transcription termination factor MTERF2, chloroplastic-like
sly-u.5	101268097	transcription termination factor MTERF6, chloroplastic/mitochondrial
sly-u.5	101267803	uncharacterized LOC101267803
sot-r.1	102602405	uncharacterized LOC102602405
sot-r.1	102587512	uncharacterized LOC102587512
sot-r.1	102585481	uncharacterized LOC102585481
nta-r.1	107807055	transcription termination factor MTERF15, mitochondrial-like
nta-r.1	107782570	transcription termination factor MTERF15, mitochondrial
osa-u.5	9267605	transcription termination factor MTERF8, chloroplastic
osa-u.5	4340542	transcription termination factor MTERF9, chloroplastic
osa-u.5	9266609	transcription termination factor MTERF4, chloroplastic
zma-u.5	100193811	uncharacterized LOC100193811
zma-u.5	100285792	uncharacterized LOC100285792
zma-u.5	100285204	uncharacterized LOC100285204
tae-r.2	123135439	uncharacterized LOC123135439
tae-r.2	123135440	uncharacterized LOC123135440
tae-r.2	123135441	uncharacterized LOC123135441
hvu-r.1	123401957	uncharacterized LOC123401957
hvu-r.1	123401968	uncharacterized LOC123401968
sbi-r.1	8075183	transcription termination factor MTERF8, chloroplastic
sbi-r.1	8071326	uncharacterized LOC8071326
sbi-r.1	8071051	transcription termination factor MTERF15, mitochondrial
bdi-r.1	100842672	uncharacterized LOC100842672
bdi-r.1	104581607	uncharacterized LOC104581607
bdi-r.1	104583401	uncharacterized LOC104583401

Top 50 coexpressed genes to 7462501 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7462501 (ppo-u.5 coexpression data)

CoexMap"127903915"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009658 [list] [network] chloroplast organization	(99 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1948 genes)	IEA

GO CC

GO:0009507 [list] [network] chloroplast

(718 genes)

IEA

GO MF

GO:0003690 [list] [network] double-stranded DNA binding

(569 genes)

IEA

Protein

XP_052309484.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 2, cyto_mito 1

(predict for XP_052309484.1)

Subcellular
localization
TargetP

chlo 8, mito 3

(predict for XP_052309484.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7462501	ppo-u.5 for 18109306	ppo-u.5 for 7476812	gma-u.5 for 100792944	gma-u.5 for 100806386	gma-u.5 for 106796317	mtr-u.5 for 25501780	mtr-u.5 for 25501781	mtr-u.5 for 25488108	ath-u.5 for AT5G07900	ath-u.5 for AT5G64950	ath-u.5 for AT1G21150	bra-r.6 for 103862768	bra-r.6 for 103858260	vvi-u.5 for 100241175	vvi-u.5 for 100245862	ghi-r.1 for 107916704	ghi-r.1 for 107895242	ghi-r.1 for 107908420	bna-r.1 for BNAC01G30050D	bna-r.1 for 106365769	bna-r.1 for 106418515	cit-r.1 for 102610867	cit-r.1 for 102611574	cit-r.1 for 102628676	sly-u.5 for 101249514	sly-u.5 for 101268097	sly-u.5 for 101267803	sot-r.1 for 102602405	sot-r.1 for 102587512	sot-r.1 for 102585481	nta-r.1 for 107807055	nta-r.1 for 107782570	osa-u.5 for 9267605	osa-u.5 for 4340542	osa-u.5 for 9266609	zma-u.5 for 100193811	zma-u.5 for 100285792	zma-u.5 for 100285204	tae-r.2 for 123135439	tae-r.2 for 123135440	tae-r.2 for 123135441	hvu-r.1 for 123401957	hvu-r.1 for 123401968	sbi-r.1 for 8075183	sbi-r.1 for 8071326	sbi-r.1 for 8071051	bdi-r.1 for 100842672	bdi-r.1 for 104581607	bdi-r.1 for 104583401

Ortholog

Ortholog ID: 37

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC18111233

transcription termination factor MTERF9, chloroplastic

uncharacterized LOC106796317

uncharacterized LOC102661687

transcription termination factor MTERF15, mitochondrial

uncharacterized LOC25501780

uncharacterized LOC25494089

uncharacterized LOC11422280

Mitochondrial transcription termination factor family protein

uncharacterized LOC103862768

transcription termination factor MTERF8, chloroplastic

transcription termination factor MTERF9, chloroplastic-like

uncharacterized LOC100246295

transcription termination factor MTERF15, mitochondrial

transcription termination factor MTERF6, chloroplastic/mitochondrial

uncharacterized LOC107931417

transcription termination factor MTERF8, chloroplastic

transcription termination factor MTERF4, chloroplastic-like

transcription termination factor MTERF2, chloroplastic-like

transcription termination factor MTERF8, chloroplastic

transcription termination factor MTERF2, chloroplastic-like

transcription termination factor MTERF15, mitochondrial-like

uncharacterized LOC102622219

transcription termination factor MTERF6, chloroplastic/mitochondrial

uncharacterized LOC101267803

transcription termination factor MTERF9, chloroplastic

uncharacterized LOC102585626

uncharacterized LOC102588163

uncharacterized LOC102589966

transcription termination factor MTERF8, chloroplastic-like

transcription termination factor MTERF15, mitochondrial-like

transcription termination factor MTERF8, chloroplastic-like

transcription termination factor MTERF2, chloroplastic

transcription termination factor MTERF4, chloroplastic

uncharacterized LOC100193811

uncharacterized LOC100285204

uncharacterized LOC100284682

uncharacterized LOC123080704

transcription termination factor MTERF8, chloroplastic

uncharacterized LOC123145472

transcription termination factor MTERF8, chloroplastic-like

uncharacterized LOC123411721

uncharacterized LOC8057363

transcription termination factor MTEF1, chloroplastic

uncharacterized LOC8062993

uncharacterized LOC100837156

uncharacterized LOC100840205

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo00190	Oxidative phosphorylation	2
ppo01200	Carbon metabolism	2
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00061	Fatty acid biosynthesis	3
gma01212	Fatty acid metabolism	3
gma00620	Pyruvate metabolism	2
gma00640	Propanoate metabolism	2
gma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	10
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03250	Viral life cycle - HIV-1	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00860	Porphyrin metabolism	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	2
bna00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly04382	Cornified envelope formation	2
sly01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot00280	Valine, leucine and isoleucine degradation	2
sot00270	Cysteine and methionine metabolism	2
sot00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta00220	Arginine biosynthesis	2
nta01210	2-Oxocarboxylic acid metabolism	2
nta01230	Biosynthesis of amino acids	2
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	4
zma00195	Photosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00510	N-Glycan biosynthesis	2
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	7
bdi03013	Nucleocytoplasmic transport	3

Expression

Expression pattern

Entrez Gene ID^*

18111233

18094344

106796317

102661687

100806920

25501780

25494089

11422280

830684

836619

838711

103862768

103858260

100241175

100246295

100258309

107916058

107931417

121204522

106365769

106418515

106434119

102619962

127900674

102622219

101268097

101267803

101258025

102585626

102588163

102589966

107826212

107777294

107759636

4343048

4338741

100193811

100285204

100284682

123080704

123145473

123145472

123401732

123411721

8057363

8057353

8062993

100837156

100840205

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	3	2	2	3	3	3	3	3	2	3	3	3	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7462501 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7462501 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**