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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   ycf4   photosystem I assembly protein Ycf4 
 ath-u.5   ycf4   photosystem I assembly protein Ycf4 
 vvi-u.5   ycf4   photosystem I assembly protein Ycf4 
 vvi-u.5   ycf4   ycf4 
 sly-u.5   ycf4   photosystem I assembly protein ycf4 
 osa-u.5   ycf4   photosystem I assembly protein Ycf4 
 zma-u.5   ycf4   photosystem I assembly protein Ycf4 

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Top 50 coexpressed genes to ycf4 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ycf4 (ppo-u.5 coexpression data)

CoexMap"127904151"


ppoLOC127904151 | Entrez gene ID : 127904151    
Species ppo ath vvi sly osa zma sot hvu tae cit sbi gma ghi cre bna nta bdi bra mtr
Paralog 1 1 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0015979 [list] [network] photosynthesis  (119 genes)  IEA  
GO CC
GO:0009522 [list] [network] photosystem I  (16 genes)  IEA  
GO:0009579 [list] [network] thylakoid  (205 genes)  IEA  
GO:0016020 [list] [network] membrane  (3780 genes)  IEA  
GO MF
Protein XP_052302164.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 2,  chlo 1,  extr 1,  cysk_nucl 1,  nucl_plas 1,  cyto_E.R. 1  (predict for XP_052302164.1)
Subcellular
localization
TargetP
other 5,  scret 3  (predict for XP_052302164.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
ycf4

.
ath-u.5
for
ycf4

.
vvi-u.5
for
ycf4

.
vvi-u.5
for
ycf4

.
sly-u.5
for
ycf4

.
osa-u.5
for
ycf4

.
zma-u.5
for
ycf4

.


Ortholog ID: 12060
Species ath sly osa zma vvi vvi ppo ghi sbi sot cit bdi nta
Symbol ycf4 ycf4 ycf4 ycf4 ycf4 ycf4 ycf4 ycf4 ycf4 ycf4 ycf4 ycf4 ycf4
Function* photosystem I assembly protein Ycf4 photosystem I assembly protein ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4 ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4 photosystem I assembly protein Ycf4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 10
ath00195 Photosynthesis 8
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 12
sly00195 Photosynthesis 7
sly03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 7
osa00195 Photosynthesis 7
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 11
zma00190 Oxidative phosphorylation 5
zma00630 Glyoxylate and dicarboxylate metabolism 2
zma00710 Carbon fixation by Calvin cycle 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 9
vvi00195 Photosynthesis 6
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 10
vvi00195 Photosynthesis 6
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo00195 Photosynthesis 4
ppo00190 Oxidative phosphorylation 3
ppo03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 6
ghi00061 Fatty acid biosynthesis 3
ghi00620 Pyruvate metabolism 3
ghi00640 Propanoate metabolism 3
ghi01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 7
sbi03010 Ribosome 3
sbi00190 Oxidative phosphorylation 3
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 12
sot00190 Oxidative phosphorylation 2
sot01200 Carbon metabolism 2
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00190 Oxidative phosphorylation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 9
bdi00190 Oxidative phosphorylation 6
bdi00970 Aminoacyl-tRNA biosynthesis 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 12
nta00190 Oxidative phosphorylation 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844752 3950385 3131468 1466362 7498535 4025048 4929681 3989160 4549170 4099988 4271216 6439787 1466297
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