ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7464100	sigma factor binding protein 1, chloroplastic
gma-u.5	102661022	sigma factor binding protein 1, chloroplastic
gma-u.5	102665525	uncharacterized LOC102665525
gma-u.5	100808231	uncharacterized LOC100808231
mtr-u.5	11444007	sigma factor binding protein 1, chloroplastic
mtr-u.5	11420359	uncharacterized LOC11420359
mtr-u.5	11413308	sigma factor binding protein 2, chloroplastic
ath-u.5	SIB1	sigma factor binding protein 1
bra-r.6	103866537	sigma factor binding protein 2, chloroplastic
bra-r.6	103863089	sigma factor binding protein 1, chloroplastic
bra-r.6	103863088	sigma factor binding protein 1, chloroplastic
vvi-u.5	100243497	sigma factor binding protein 2, chloroplastic
ghi-r.1	121207605	sigma factor binding protein 1, chloroplastic
ghi-r.1	107927566	sigma factor binding protein 1, chloroplastic
ghi-r.1	107915563	sigma factor binding protein 1, chloroplastic
bna-r.1	106450674	sigma factor binding protein 2, chloroplastic
bna-r.1	106368000	sigma factor binding protein 1, chloroplastic-like
sly-u.5	101268143	sigma factor binding protein 1, chloroplastic
sot-r.1	107060694	sigma factor binding protein 2, chloroplastic-like
sot-r.1	102588850	uncharacterized LOC102588850
nta-r.1	107793698	uncharacterized LOC107793698
osa-u.5	4327561	uncharacterized LOC4327561
osa-u.5	9272551	VQ motif-containing protein 10
osa-u.5	4332662	uncharacterized LOC4332662
zma-u.5	100284142	uncharacterized LOC100284142
zma-u.5	100283012	VQ motif family protein
zma-u.5	100283880	uncharacterized LOC100283880
tae-r.2	123094868	uncharacterized LOC123094868
hvu-r.1	123440394	sigma factor binding protein 1, chloroplastic-like
sbi-r.1	8055268	uncharacterized LOC8055268
sbi-r.1	8059833	uncharacterized LOC8059833
bdi-r.1	106865623	uncharacterized LOC106865623

Annotation

functional annotation

KEGG

GO BP

GO:0051091 [list] [network] positive regulation of DNA-binding transcription factor activity

(4 genes)

IEA

GO CC

GO MF

Protein

XP_052307162.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto_nucl 4, mito 1, plas 1, mito_plas 1

(predict for XP_052307162.1)

Subcellular
localization
TargetP

other 7, mito 3

(predict for XP_052307162.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7464100	gma-u.5 for 102661022	gma-u.5 for 102665525	gma-u.5 for 100808231	mtr-u.5 for 11444007	mtr-u.5 for 11420359	mtr-u.5 for 11413308	ath-u.5 for SIB1	bra-r.6 for 103866537	bra-r.6 for 103863089	bra-r.6 for 103863088	vvi-u.5 for 100243497	ghi-r.1 for 121207605	ghi-r.1 for 107927566	ghi-r.1 for 107915563	bna-r.1 for 106450674	bna-r.1 for 106368000	sly-u.5 for 101268143	sot-r.1 for 107060694	sot-r.1 for 102588850	nta-r.1 for 107793698	osa-u.5 for 4327561	osa-u.5 for 9272551	osa-u.5 for 4332662	zma-u.5 for 100284142	zma-u.5 for 100283012	zma-u.5 for 100283880	tae-r.2 for 123094868	hvu-r.1 for 123440394	sbi-r.1 for 8055268	sbi-r.1 for 8059833	bdi-r.1 for 106865623

Ortholog

Ortholog ID: 2544

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SIB1

Function^*

sigma factor binding protein 1, chloroplastic

uncharacterized LOC102665525

uncharacterized LOC100808231

uncharacterized LOC100306482

sigma factor binding protein 1, chloroplastic

uncharacterized LOC11420359

sigma factor binding protein 2, chloroplastic

sigma factor binding protein 1

sigma factor binding protein 1, chloroplastic

sigma factor binding protein 2, chloroplastic

sigma factor binding protein 1, chloroplastic

sigma factor binding protein 2, chloroplastic

sigma factor binding protein 1, chloroplastic

sigma factor binding protein 1, chloroplastic-like

sigma factor binding protein 2, chloroplastic-like

sigma factor binding protein 1, chloroplastic

sigma factor binding protein 2, chloroplastic-like

uncharacterized LOC102588850

uncharacterized LOC107793698

uncharacterized LOC4327561

uncharacterized LOC4332662

uncharacterized LOC100284142

VQ motif family protein

uncharacterized LOC100283880

uncharacterized LOC123094868

sigma factor binding protein 1, chloroplastic

sigma factor binding protein 1, chloroplastic-like

uncharacterized LOC8055268

uncharacterized LOC8059833

uncharacterized LOC106865623

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	3
gma04016	MAPK signaling pathway - plant	2
gma04070	Phosphatidylinositol signaling system	2
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	4
mtr04075	Plant hormone signal transduction	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	3
mtr04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04016	MAPK signaling pathway - plant	2
bna04075	Plant hormone signal transduction	2
bna04626	Plant-pathogen interaction	2
bna00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	5
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00999	Biosynthesis of various plant secondary metabolites	2
osa00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04016	MAPK signaling pathway - plant	2
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00195	Photosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	2
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	2
sbi00561	Glycerolipid metabolism	2
sbi00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	4

Expression

Expression pattern

Entrez Gene ID^*

7464100

102665525

100808231

100306482

11444007

11420359

11413308

824838

103863088

103857968

103841570

100243497

121207605

107927566

107915563

106368000

106394434

101268143

107060694

102588850

107793698

4327561

4332662

100284142

100283012

100283880

123094868

123062355

123440394

8055268

8059833

106865623

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7464100 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7464100 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cit	cre
Paralog	1	3	3	1	3	1	3	2	1	2	1	3	3	1	1	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7464100 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7464100 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**