ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100251431	nuclear transcription factor Y subunit B-3
vvi-u.5	100854372	nuclear transcription factor Y subunit B-3
vvi-u.5	100265391	nuclear transcription factor Y subunit B-1
ath-u.5	NF-YB2	nuclear factor Y, subunit B2
ath-u.5	NF-YB8	nuclear factor Y, subunit B8
ath-u.5	NF-YB1	nuclear factor Y, subunit B1
gma-u.5	100798667	nuclear transcription factor Y subunit B-10
gma-u.5	100500556	nuclear factor Y, subunit B3-like protein
gma-u.5	100820170	nuclear transcription factor Y subunit B-10
bra-r.6	103869864	nuclear transcription factor Y subunit B-3
bra-r.6	103867074	nuclear transcription factor Y subunit B-1
bra-r.6	103865575	nuclear transcription factor Y subunit B-8
ppo-u.5	7489621	nuclear transcription factor Y subunit B-1
ppo-u.5	7458474	nuclear transcription factor Y subunit B-3
ppo-u.5	7465295	nuclear transcription factor Y subunit B-10
mtr-u.5	11426014	nuclear transcription factor Y subunit B-3
mtr-u.5	11429747	nuclear transcription factor Y subunit B-1
mtr-u.5	25486265	nuclear transcription factor Y subunit B-3
ghi-r.1	107930670	nuclear transcription factor Y subunit B-1
ghi-r.1	107954982	nuclear transcription factor Y subunit B-3
ghi-r.1	107924602	nuclear transcription factor Y subunit B-3
bna-r.1	125578437	nuclear transcription factor Y subunit B-10-like
bna-r.1	106452238	nuclear transcription factor Y subunit B-3
bna-r.1	106392627	nuclear transcription factor Y subunit B-8
cit-r.1	102624322	nuclear transcription factor Y subunit B-8
cit-r.1	102609097	nuclear transcription factor Y subunit B-3
cit-r.1	102625647	nuclear transcription factor Y subunit B-1
sly-u.5	101251575	nuclear transcription factor Y subunit B-10-like
sly-u.5	101258170	nuclear transcription factor Y subunit B-3
sly-u.5	101257257	nuclear transcription factor Y subunit B-10
sot-r.1	102584379	nuclear transcription factor Y subunit B-3-like
sot-r.1	102577473	transcription factor NF-Y CCAAT-binding-like protein-like
sot-r.1	102592587	nuclear transcription factor Y subunit B-3
nta-r.1	107774732	nuclear transcription factor Y subunit B-8
nta-r.1	107776759	nuclear transcription factor Y subunit B-3-like
nta-r.1	107797954	nuclear transcription factor Y subunit B-10
osa-u.5	4333105	nuclear transcription factor Y subunit B-8-like
osa-u.5	4339676	nuclear transcription factor Y subunit B-4-like
osa-u.5	9268285	nuclear transcription factor Y subunit B-2-like
zma-u.5	100281247	uncharacterized LOC100281247
zma-u.5	100281337	uncharacterized LOC100281337
zma-u.5	100273424	CAAT box binding protein 1
tae-r.2	123059869	nuclear transcription factor Y subunit B-8
tae-r.2	123187995	nuclear transcription factor Y subunit B-10
tae-r.2	123183211	nuclear transcription factor Y subunit B-4
sbi-r.1	8070049	nuclear transcription factor Y subunit B-8
sbi-r.1	8079169	nuclear transcription factor Y subunit B-10
sbi-r.1	8069671	nuclear transcription factor Y subunit B-11
bdi-r.1	100833263	nuclear transcription factor Y subunit B
bdi-r.1	100831223	nuclear transcription factor Y subunit B-3
bdi-r.1	100831766	nuclear transcription factor Y subunit B-8
cre-r.1	CHLRE_02g079200v5	uncharacterized protein

Top 50 coexpressed genes to 100251431 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100251431 (vvi-u.5 coexpression data)

CoexMap"132252613"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(343 genes)

IEA

GO CC

GO:0016602 [list] [network] CCAAT-binding factor complex

(19 genes)

IEA

GO MF

GO:0001228 [list] [network] DNA-binding transcription activator activity, RNA polymerase II-specific	(21 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(77 genes)	IEA
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(190 genes)	IEA

Protein

XP_059593415.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 4, extr 1, cyto 1, cysk 1

(predict for XP_059593415.1)

Subcellular
localization
TargetP

other 7, chlo 4

(predict for XP_059593415.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100251431	vvi-u.5 for 100854372	vvi-u.5 for 100265391	ath-u.5 for NF-YB2	ath-u.5 for NF-YB8	ath-u.5 for NF-YB1	gma-u.5 for 100798667	gma-u.5 for 100500556	gma-u.5 for 100820170	bra-r.6 for 103869864	bra-r.6 for 103867074	bra-r.6 for 103865575	ppo-u.5 for 7489621	ppo-u.5 for 7458474	ppo-u.5 for 7465295	mtr-u.5 for 11426014	mtr-u.5 for 11429747	mtr-u.5 for 25486265	ghi-r.1 for 107930670	ghi-r.1 for 107954982	ghi-r.1 for 107924602	bna-r.1 for 125578437	bna-r.1 for 106452238	bna-r.1 for 106392627	cit-r.1 for 102624322	cit-r.1 for 102609097	cit-r.1 for 102625647	sly-u.5 for 101251575	sly-u.5 for 101258170	sly-u.5 for 101257257	sot-r.1 for 102584379	sot-r.1 for 102577473	sot-r.1 for 102592587	nta-r.1 for 107774732	nta-r.1 for 107776759	nta-r.1 for 107797954	osa-u.5 for 4333105	osa-u.5 for 4339676	osa-u.5 for 9268285	zma-u.5 for 100281247	zma-u.5 for 100281337	zma-u.5 for 100273424	tae-r.2 for 123059869	tae-r.2 for 123187995	tae-r.2 for 123183211	sbi-r.1 for 8070049	sbi-r.1 for 8079169	sbi-r.1 for 8069671	bdi-r.1 for 100833263	bdi-r.1 for 100831223	bdi-r.1 for 100831766	cre-r.1 for CHLRE_02g079200v5

Ortholog

Ortholog ID: 350

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC100251431

LOC100261380

LOC100259924

NF-YB8

NF-YB1

NF-YB10

Function^*