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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   104877812   uncharacterized protein At4g26485 
 gma-u.5   100810848   uncharacterized protein At4g26485 
 ppo-u.5   7491897   heavy metal-associated isoprenylated plant protein 41 
 mtr-u.5   11415662   uncharacterized protein At4g26485 
 ghi-r.1   107917062   uncharacterized LOC107917062 
 ghi-r.1   121213556   heavy metal-associated isoprenylated plant protein 41-like 
 ghi-r.1   107921813   uncharacterized LOC107921813 
 cit-r.1   102623488   uncharacterized protein At4g26485-like 
 sly-u.5   101268886   25S rRNA (uridine(2634)-N(3))-methyltransferase 
 sot-r.1   102600672   uncharacterized LOC102600672 
 nta-r.1   107784212   uncharacterized protein At4g26485 
 nta-r.1   107807459   uncharacterized protein At4g26485-like 
 osa-u.5   4347379   heavy metal-associated isoprenylated plant protein 41 
 zma-u.5   100277735   uncharacterized LOC100277735 
 hvu-r.1   123399190   heavy metal-associated isoprenylated plant protein 41-like 
 hvu-r.1   123397364   uncharacterized LOC123397364 
 sbi-r.1   8055834   uncharacterized LOC8055834 
 sbi-r.1   8055833   uncharacterized LOC8055833 
 sbi-r.1   8055837   uncharacterized LOC8055837 

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Top 50 coexpressed genes to 104877812 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104877812 (vvi-u.5 coexpression data)

CoexMap"132253470"


vviLOC132253470 | Entrez gene ID : 132253470    
Species vvi gma ppo mtr ghi cit sly sot nta osa zma hvu sbi bdi tae bna cre ath bra
Paralog 1 1 1 1 3 1 1 1 2 1 1 2 3 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070475 [list] [network] rRNA base methylation  (27 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (4496 genes)  IEA  
GO MF
GO:0070042 [list] [network] rRNA (uridine-N3-)-methyltransferase activity  (15 genes)  IEA  
Protein XP_059591577.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 1,  chlo 1,  extr 1,  vacu 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_059591577.1)
Subcellular
localization
TargetP
other 9  (predict for XP_059591577.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
104877812
gma-u.5
for
100810848
ppo-u.5
for
7491897
mtr-u.5
for
11415662
ghi-r.1
for
107917062
ghi-r.1
for
121213556
ghi-r.1
for
107921813
cit-r.1
for
102623488
sly-u.5
for
101268886
sot-r.1
for
102600672
nta-r.1
for
107784212
nta-r.1
for
107807459
osa-u.5
for
4347379
zma-u.5
for
100277735
hvu-r.1
for
123399190
hvu-r.1
for
123397364
sbi-r.1
for
8055834
sbi-r.1
for
8055833
sbi-r.1
for
8055837


Ortholog ID: 836
Species vvi gma ppo ppo mtr ghi ghi cit sly sot nta nta osa zma hvu hvu sbi sbi sbi bdi
Symbol LOC100244779 LOC100810848 LOC7491897 LOC112326006 LOC11415662 LOC107917062 LOC107917093 LOC102623488 LOC101268886 LOC102600672 LOC107784212 LOC107807459 LOC4347379 LOC100277735 LOC123399190 LOC123394923 LOC8055834 LOC8055833 LOC8055831 LOC100822578
Function* uncharacterized protein At4g26485 uncharacterized protein At4g26485 heavy metal-associated isoprenylated plant protein 41 heavy metal-associated isoprenylated plant protein 41-like uncharacterized protein At4g26485 uncharacterized LOC107917062 uncharacterized LOC107917093 uncharacterized protein At4g26485-like 25S rRNA (uridine(2634)-N(3))-methyltransferase uncharacterized LOC102600672 uncharacterized protein At4g26485 uncharacterized protein At4g26485-like heavy metal-associated isoprenylated plant protein 41 uncharacterized LOC100277735 heavy metal-associated isoprenylated plant protein 41-like uncharacterized LOC123394923 uncharacterized LOC8055834 uncharacterized LOC8055833 heavy metal-associated isoprenylated plant protein 41 uncharacterized LOC100822578
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 3
vvi03420 Nucleotide excision repair 3
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 2
zma03410 Base excision repair 2
zma03420 Nucleotide excision repair 2
zma03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100244779 100810848 7491897 112326006 11415662 107917062 107917093 102623488 101268886 102600672 107784212 107807459 4347379 100277735 123399190 123394923 8055834 8055833 8055831 100822578
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