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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   psbC   PSII 43 kDa protein 
 ath-u.5   psbC   photosystem II 44 kDa protein 
 gma-u.5   psbC   PSII 43 kDa protein 
 ppo-u.5   psbC   photosystem II 44 kDa protein 
 mtr-u.5   120580070   photosystem II CP43 reaction center protein-like 
 mtr-u.5   psbC   photosystem II 44 kDa protein 
 ghi-r.1   121219800   photosystem II CP43 reaction center protein-like 
 ghi-r.1   psbC   PSII 43 kDa protein 
 bna-r.1   125602830   photosystem II CP43 reaction center protein-like 
 bna-r.1   125603282   photosystem II CP43 reaction center protein-like 
 bna-r.1   125603284   photosystem II CP43 reaction center protein-like 
 cit-r.1   psbC   photosystem II 44 kDa protein 
 sly-u.5   psbC   photosystem II CP43 chlorophyll apoprotein 
 sot-r.1   psbC   photosystem II 44 kDa protein 
 nta-r.1   psbC   PSII 43 kDa protein 
 osa-u.5   psbC   photosystem II 44 kDa protein 
 zma-u.5   psbC   photosystem II 44 kDa protein 
 tae-r.2   123097283   photosystem II CP43 reaction center protein 
 hvu-r.1   123421742   photosystem II CP43 reaction center protein-like 
 hvu-r.1   psbC   photosystem II 44 kDa protein 
 hvu-r.1   123420612   photosystem II CP43 reaction center protein 
 sbi-r.1   psbC   photosystem II 44 kDa protein 
 bdi-r.1   psbC   photosystem II 44 kDa protein 

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Top 50 coexpressed genes to psbC (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to psbC (vvi-u.5 coexpression data)

CoexMap"132253483"


vviLOC132253483 | Entrez gene ID : 132253483    
Species vvi ath gma ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi bra cre
Paralog 1 1 1 1 2 2 3 1 1 1 1 1 1 1 3 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00195 [list] [network] Photosynthesis (102 genes)
GO BP
GO:0009772 [list] [network] photosynthetic electron transport in photosystem II  (9 genes)  IEA  
GO:0019684 [list] [network] photosynthesis, light reaction  (51 genes)  IEA  
GO:0015979 [list] [network] photosynthesis  (92 genes)  IEA  
GO CC
GO:0009523 [list] [network] photosystem II  (33 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (82 genes)  IEA  
GO MF
GO:0016168 [list] [network] chlorophyll binding  (5 genes)  IEA  
Protein XP_059591653.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  cyto 2,  nucl 1,  E.R. 1  (predict for XP_059591653.1)
Subcellular
localization
TargetP
other 9  (predict for XP_059591653.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
psbC
ath-u.5
for
psbC
gma-u.5
for
psbC
ppo-u.5
for
psbC
mtr-u.5
for
120580070
mtr-u.5
for
psbC
ghi-r.1
for
121219800
ghi-r.1
for
psbC
bna-r.1
for
125602830
bna-r.1
for
125603282
bna-r.1
for
125603284
cit-r.1
for
psbC
sly-u.5
for
psbC
sot-r.1
for
psbC
nta-r.1
for
psbC
osa-u.5
for
psbC
zma-u.5
for
psbC
tae-r.2
for
123097283
hvu-r.1
for
123421742
hvu-r.1
for
psbC
hvu-r.1
for
123420612
sbi-r.1
for
psbC
bdi-r.1
for
psbC


Ortholog ID: 4482
Species ath gma ppo mtr mtr ghi ghi bna bna bna cit sly sot nta osa zma tae hvu hvu sbi bdi
Symbol psbC psbC psbC LOC120580070 psbC LOC121219800 psbC LOC125602830 LOC125601828 psbC psbC psbC psbC psbC psbC psbC LOC123097283 LOC123421742 psbC psbC psbC
Function* photosystem II 44 kDa protein PSII 43 kDa protein photosystem II 44 kDa protein photosystem II CP43 reaction center protein-like photosystem II 44 kDa protein photosystem II CP43 reaction center protein-like PSII 43 kDa protein photosystem II CP43 reaction center protein-like photosystem II CP43 reaction center protein-like photosystem II 44 kDa protein photosystem II 44 kDa protein photosystem II CP43 chlorophyll apoprotein photosystem II 44 kDa protein PSII 43 kDa protein photosystem II 44 kDa protein photosystem II 44 kDa protein photosystem II CP43 reaction center protein photosystem II CP43 reaction center protein-like photosystem II 44 kDa protein photosystem II 44 kDa protein photosystem II 44 kDa protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 15
ath00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 15
gma00190 Oxidative phosphorylation 4
gma01200 Carbon metabolism 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 13
ppo00970 Aminoacyl-tRNA biosynthesis 6
ppo00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03010 Ribosome 5
mtr00190 Oxidative phosphorylation 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00195 Photosynthesis 7
mtr03010 Ribosome 4
mtr00190 Oxidative phosphorylation 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 6
ghi00190 Oxidative phosphorylation 3
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00195 Photosynthesis 5
ghi00630 Glyoxylate and dicarboxylate metabolism 3
ghi00710 Carbon fixation by Calvin cycle 3
ghi00061 Fatty acid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 11
cit00630 Glyoxylate and dicarboxylate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 13
sly00970 Aminoacyl-tRNA biosynthesis 2
sly00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 12
sot01200 Carbon metabolism 2
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 13
nta00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 13
osa00190 Oxidative phosphorylation 5
osa03010 Ribosome 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 16
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 13
tae00190 Oxidative phosphorylation 4
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 8
sbi03010 Ribosome 6
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 6
bdi00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844773 3989283 4929655 120580070 5333132 121219800 3989206 125602830 125601828 11542068 4271201 3950405 4099962 800516 3131411 845201 123097283 123421742 4525152 4549104 6439864
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