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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100246893   pentatricopeptide repeat-containing protein At2g13600 
 ppo-u.5   7485504   pentatricopeptide repeat-containing protein At2g13600 
 ghi-r.1   107902853   pentatricopeptide repeat-containing protein DOT4, chloroplastic 
 ghi-r.1   107907510   pentatricopeptide repeat-containing protein At1g11290, chloroplastic 
 cit-r.1   102627142   pentatricopeptide repeat-containing protein At2g13600-like 
 sly-u.5   101262128   pentatricopeptide repeat-containing protein At4g33170-like 
 sot-r.1   102585674   pentatricopeptide repeat-containing protein At4g33170-like 
 nta-r.1   107762113   pentatricopeptide repeat-containing protein At4g33170-like 
 nta-r.1   107793845   pentatricopeptide repeat-containing protein At4g33170-like 

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Top 50 coexpressed genes to 100246893 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100246893 (vvi-u.5 coexpression data)

CoexMap"132253828"


vviLOC132253828 | Entrez gene ID : 132253828    
Species vvi ppo ghi cit sly sot nta bdi osa tae bna zma cre mtr sbi gma bra ath hvu
Paralog 1 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (500 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_059593056.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  nucl 1,  pero 1,  cysk 1,  cysk_nucl 1  (predict for XP_059593056.1)
Subcellular
localization
TargetP
other 8  (predict for XP_059593056.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100246893
ppo-u.5
for
7485504
ghi-r.1
for
107902853
ghi-r.1
for
107907510
cit-r.1
for
102627142
sly-u.5
for
101262128
sot-r.1
for
102585674
nta-r.1
for
107762113
nta-r.1
for
107793845


Ortholog ID: 15568
Species vvi ppo ghi ghi cit sly sot nta nta
Symbol LOC100246893 LOC7485504 LOC107902853 LOC107907510 LOC102627142 LOC101262128 LOC102585674 LOC107762113 LOC107793845
Function* pentatricopeptide repeat-containing protein At2g13600 pentatricopeptide repeat-containing protein At2g13600 pentatricopeptide repeat-containing protein DOT4, chloroplastic pentatricopeptide repeat-containing protein At1g11290, chloroplastic pentatricopeptide repeat-containing protein At2g13600-like pentatricopeptide repeat-containing protein At4g33170-like pentatricopeptide repeat-containing protein At4g33170-like pentatricopeptide repeat-containing protein At4g33170-like pentatricopeptide repeat-containing protein At4g33170-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100246893 7485504 107902853 107907510 102627142 101262128 102585674 107762113 107793845
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