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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   rpoC1   RNA polymerase beta' chain 
 ath-u.5   rpoC1   RNA polymerase beta' subunit 
 gma-u.5   rpoC1   RNA polymerase beta' chain 
 bra-r.6   117131035   DNA-directed RNA polymerase subunit beta' 
 ppo-u.5   rpoC1   RNA polymerase beta' subunit 
 mtr-u.5   120579359   DNA-directed RNA polymerase subunit beta' 
 mtr-u.5   rpoC1   RNA polymerase beta' subunit 
 mtr-u.5   120579358   DNA-directed RNA polymerase subunit beta' 
 ghi-r.1   121220050   DNA-directed RNA polymerase subunit beta'-like 
 ghi-r.1   rpoC1   RNA polymerase beta' chain 
 bna-r.1   125601412   DNA-directed RNA polymerase subunit beta' 
 bna-r.1   125601854   DNA-directed RNA polymerase subunit beta'-like 
 cit-r.1   rpoC1   RNA polymerase beta' subunit 
 sly-u.5   rpoC1   RNA polymerase beta subunit 
 sot-r.1   rpoC1   RNA polymerase beta' subunit 
 nta-r.1   rpoC1   RNA polymerase beta' chain 
 osa-u.5   rpoC1   RNA polymerase beta' subunit 
 zma-u.5   118475931   DNA-directed RNA polymerase subunit beta' 
 sbi-r.1   rpoC1   RNA polymerase beta' subunit 
 bdi-r.1   rpoC1   RNA polymerase beta' subunit 

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Top 50 coexpressed genes to rpoC1 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to rpoC1 (vvi-u.5 coexpression data)

CoexMap"132254436"


vviLOC132254436 | Entrez gene ID : 132254436    
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma sbi bdi cre tae hvu
Paralog 1 1 1 1 1 3 2 2 1 1 1 1 1 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03020 [list] [network] RNA polymerase (51 genes)
GO BP
GO:0006351 [list] [network] DNA-templated transcription  (199 genes)  IEA  
GO CC
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (30 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1602 genes)  IEA  
Protein XP_059596022.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  nucl 1,  mito 1,  plas 1,  pero 1,  nucl_plas 1,  mito_plas 1  (predict for XP_059596022.1)
Subcellular
localization
TargetP
other 7  (predict for XP_059596022.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
rpoC1
ath-u.5
for
rpoC1
gma-u.5
for
rpoC1
bra-r.6
for
117131035
ppo-u.5
for
rpoC1
mtr-u.5
for
120579359
mtr-u.5
for
rpoC1
mtr-u.5
for
120579358
ghi-r.1
for
121220050
ghi-r.1
for
rpoC1
bna-r.1
for
125601412
bna-r.1
for
125601854
cit-r.1
for
rpoC1
sly-u.5
for
rpoC1
sot-r.1
for
rpoC1
nta-r.1
for
rpoC1
osa-u.5
for
rpoC1
zma-u.5
for
118475931
sbi-r.1
for
rpoC1
bdi-r.1
for
rpoC1


Ortholog ID: 3178
Species vvi ath gma bra ppo mtr mtr mtr ghi ghi bna bna cit sly sot nta osa zma sbi bdi
Symbol rpoC1 rpoC1 rpoC1 LOC117131035 rpoC1 LOC120579359 rpoC1 LOC120579358 LOC121220050 rpoC1 LOC125604864 LOC125595940 rpoC1 rpoC1 rpoC1 rpoC1 rpoC1 LOC118475931 rpoC1 rpoC1
Function* RNA polymerase beta' chain RNA polymerase beta' subunit RNA polymerase beta' chain DNA-directed RNA polymerase subunit beta' RNA polymerase beta' subunit DNA-directed RNA polymerase subunit beta' RNA polymerase beta' subunit DNA-directed RNA polymerase subunit beta' DNA-directed RNA polymerase subunit beta'-like RNA polymerase beta' chain DNA-directed RNA polymerase subunit beta' DNA-directed RNA polymerase subunit beta' RNA polymerase beta' subunit RNA polymerase beta subunit RNA polymerase beta' subunit RNA polymerase beta' chain RNA polymerase beta' subunit DNA-directed RNA polymerase subunit beta' RNA polymerase beta' subunit RNA polymerase beta' subunit
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
vvi00190 Oxidative phosphorylation 3
vvi03020 RNA polymerase 3
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 3
ath03020 RNA polymerase 3
ath00190 Oxidative phosphorylation 3
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 8
gma03010 Ribosome 6
gma03020 RNA polymerase 4
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 6
bra03020 RNA polymerase 3
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra00710 Carbon fixation by Calvin cycle 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03020 RNA polymerase 5
ppo00195 Photosynthesis 3
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 3
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 8
cit00190 Oxidative phosphorylation 5
cit03020 RNA polymerase 3
cit01200 Carbon metabolism 3
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 7
sly03020 RNA polymerase 3
sly03010 Ribosome 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 5
sot03010 Ribosome 4
sot03020 RNA polymerase 3
sot00190 Oxidative phosphorylation 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 6
nta00190 Oxidative phosphorylation 3
nta03020 RNA polymerase 3
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 10
osa03010 Ribosome 6
osa00190 Oxidative phosphorylation 4
osa03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 7
zma00190 Oxidative phosphorylation 7
zma03020 RNA polymerase 6
zma03010 Ribosome 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 9
sbi03020 RNA polymerase 4
sbi00195 Photosynthesis 4
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 7
bdi00190 Oxidative phosphorylation 6
bdi03020 RNA polymerase 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00710 Carbon fixation by Calvin cycle 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 4025098 844784 3989292 117131035 4929644 120579359 5333131 120579358 121220050 3989196 125604864 125595940 4271234 3950486 4099931 800521 3131433 118475931 4549133 6439871
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