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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100250363   polyadenylate-binding protein RBP45 
 vvi-u.5   100257353   polyadenylate-binding protein RBP47 
 vvi-u.5   100258930   polyadenylate-binding protein RBP47 
 ath-u.5   RBP47C'   RNA-binding protein 47C' 
 ath-u.5   RBP47A   RNA-binding protein 47A 
 ath-u.5   RBP47C   RNA-binding protein 47C 
 gma-u.5   100813616   polyadenylate-binding protein RBP47B' 
 gma-u.5   100814564   polyadenylate-binding protein RBP47 
 gma-u.5   100814743   polyadenylate-binding protein RBP45 
 bra-r.6   103832915   polyadenylate-binding protein RBP47A 
 bra-r.6   103837516   polyadenylate-binding protein RBP47B 
 bra-r.6   103843233   polyadenylate-binding protein RBP45B 
 ppo-u.5   7482317   polyadenylate-binding protein RBP47B' 
 ppo-u.5   7462894   polyadenylate-binding protein RBP47 
 ppo-u.5   7458536   polyadenylate-binding protein RBP45B 
 mtr-u.5   11432878   polyadenylate-binding protein RBP47C 
 mtr-u.5   11429879   polyadenylate-binding protein RBP47B' 
 mtr-u.5   11439565   polyadenylate-binding protein RBP45 
 ghi-r.1   107935615   polyadenylate-binding protein RBP47B 
 ghi-r.1   107935388   polyadenylate-binding protein RBP45B 
 ghi-r.1   107927939   polyadenylate-binding protein RBP47B 
 bna-r.1   106451694   polyadenylate-binding protein RBP47A-like 
 bna-r.1   106418733   polyadenylate-binding protein RBP47A 
 bna-r.1   106424428   polyadenylate-binding protein RBP47A 
 cit-r.1   102608432   polyadenylate-binding protein RBP47B 
 cit-r.1   102613263   polyadenylate-binding protein RBP45C 
 cit-r.1   102613416   polyadenylate-binding protein RBP45 
 sly-u.5   101255948   polyadenylate-binding protein RBP45 
 sly-u.5   543919   DNA-binding protein 
 sly-u.5   101254975   polyadenylate-binding protein RBP45 
 sot-r.1   102597277   polyadenylate-binding protein RBP47B' 
 sot-r.1   102595348   polyadenylate-binding protein RBP47-like 
 sot-r.1   102592119   polyadenylate-binding protein RBP45 
 nta-r.1   107774489   polyadenylate-binding protein RBP45 
 nta-r.1   107776430   polyadenylate-binding protein RBP45-like 
 nta-r.1   107784011   polyadenylate-binding protein RBP45-like 
 osa-u.5   4329718   polyadenylate-binding protein RBP47 
 osa-u.5   4347299   polyadenylate-binding protein RBP47 
 osa-u.5   4344847   RNA-binding protein L-like 
 zma-u.5   100274401   Polyadenylate-binding protein RBP45C 
 zma-u.5   100278143   uncharacterized LOC100278143 
 zma-u.5   100284282   nucleic acid binding protein 
 tae-r.2   123046801   RNA-binding protein L 
 tae-r.2   123052545   polyadenylate-binding protein RBP45 
 tae-r.2   123045609   polyadenylate-binding protein RBP47 
 hvu-r.1   123449576   polyadenylate-binding protein RBP47B' 
 hvu-r.1   123427909   RNA-binding protein L-like 
 hvu-r.1   123426861   polyadenylate-binding protein RBP47-like 
 sbi-r.1   110437054   polyadenylate-binding protein RBP45-like 
 sbi-r.1   8057438   polyadenylate-binding protein RBP47 
 sbi-r.1   8059803   polyadenylate-binding protein RBP47B' 
 bdi-r.1   100835794   polyadenylate-binding protein RBP47 
 bdi-r.1   100835057   polyadenylate-binding protein RBP45 
 bdi-r.1   100831361   polyadenylate-binding protein RBP47C' 
 cre-r.1   CHLRE_16g652900v5   uncharacterized protein 

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Top 50 coexpressed genes to 100250363 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100250363 (vvi-u.5 coexpression data)

CoexMap"132254534"


vviLOC132254534 | Entrez gene ID : 132254534    
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (779 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (233 genes)  IEA  
Protein XP_059596371.1 [sequence] [blastp]
XP_059596372.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 4,  pero 2,  cyto 1,  E.R. 1,  mito_plas 1  (predict for XP_059596371.1)
nucl 6,  cyto_nucl 4,  pero 1,  cyto 1,  E.R. 1,  mito_plas 1  (predict for XP_059596372.1)
Subcellular
localization
TargetP
chlo 5,  other 4  (predict for XP_059596371.1)
chlo 5,  other 4  (predict for XP_059596372.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100250363
vvi-u.5
for
100257353
vvi-u.5
for
100258930
ath-u.5
for
RBP47C'
ath-u.5
for
RBP47A
ath-u.5
for
RBP47C
gma-u.5
for
100813616
gma-u.5
for
100814564
gma-u.5
for
100814743
bra-r.6
for
103832915
bra-r.6
for
103837516
bra-r.6
for
103843233
ppo-u.5
for
7482317
ppo-u.5
for
7462894
ppo-u.5
for
7458536
mtr-u.5
for
11432878
mtr-u.5
for
11429879
mtr-u.5
for
11439565
ghi-r.1
for
107935615
ghi-r.1
for
107935388
ghi-r.1
for
107927939
bna-r.1
for
106451694
bna-r.1
for
106418733
bna-r.1
for
106424428
cit-r.1
for
102608432
cit-r.1
for
102613263
cit-r.1
for
102613416
sly-u.5
for
101255948
sly-u.5
for
543919
sly-u.5
for
101254975
sot-r.1
for
102597277
sot-r.1
for
102595348
sot-r.1
for
102592119
nta-r.1
for
107774489
nta-r.1
for
107776430
nta-r.1
for
107784011
osa-u.5
for
4329718
osa-u.5
for
4347299
osa-u.5
for
4344847
zma-u.5
for
100274401
zma-u.5
for
100278143
zma-u.5
for
100284282
tae-r.2
for
123046801
tae-r.2
for
123052545
tae-r.2
for
123045609
hvu-r.1
for
123449576
hvu-r.1
for
123427909
hvu-r.1
for
123426861
sbi-r.1
for
110437054
sbi-r.1
for
8057438
sbi-r.1
for
8059803
bdi-r.1
for
100835794
bdi-r.1
for
100835057
bdi-r.1
for
100831361
cre-r.1
for
CHLRE_16g652900v5


Ortholog ID: 192
Species vvi vvi ath ath ath gma gma gma bra bra bra ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna cit cit sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC100257353 LOC100243203 RBP45B AT5G19350 ATRBP45C LOC100813616 LOC100785454 LOC100801562 LOC103837516 LOC103839291 LOC103869491 LOC18104937 LOC18095820 LOC18097813 LOC11446957 LOC25486138 LOC25482078 LOC107926276 LOC107920130 LOC107942660 LOC106410514 LOC125584144 LOC125609228 LOC102608432 LOC102613263 LOC101255948 LOC101254975 LOC101250426 LOC102595348 LOC102590727 LOC102583610 LOC107774489 LOC107831077 LOC107827228 LOC4344847 LOC4331788 LOC9270800 LOC103628560 LOC100273450 LOC103653663 LOC123052545 LOC123104011 LOC123112245 LOC123427909 LOC123426861 LOC123425891 LOC8057438 LOC8063033 LOC8066818 LOC100831361 LOC100840332 LOC100845432 CHLRE_16g652900v5
Function* polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47B' RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein RNA-binding (RRM/RBD/RNP motifs) family protein polyadenylate-binding protein RBP47B' polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP45C-like polyadenylate-binding protein RBP47B'-like polyadenylate-binding protein RBP47A-like polyadenylate-binding protein RBP47B polyadenylate-binding protein RBP45C polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47-like polyadenylate-binding protein RBP45-like polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 RNA-binding protein L-like polyadenylate-binding protein RBP47B' RNA-binding protein L-like polyadenylate-binding protein RBP47A uncharacterized LOC100273450 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP47 RNA-binding protein L-like polyadenylate-binding protein RBP47-like RNA-binding protein L-like polyadenylate-binding protein RBP47 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47C' polyadenylate-binding protein RBP45 polyadenylate-binding protein RBP47B' uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
vvi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
vvi03040 Spliceosome 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
mtr03015 mRNA surveillance pathway 2
mtr03040 Spliceosome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00240 Pyrimidine metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03060 Protein export 2
sly04141 Protein processing in endoplasmic reticulum 2
sly04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly03015 mRNA surveillance pathway 3
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 4
sly03040 Spliceosome 3
sly04141 Protein processing in endoplasmic reticulum 3
sly00290 Valine, leucine and isoleucine biosynthesis 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
sot03040 Spliceosome 2
sot03008 Ribosome biogenesis in eukaryotes 2
sot03013 Nucleocytoplasmic transport 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 3
osa03050 Proteasome 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
zma04712 Circadian rhythm - plant 2
zma00730 Thiamine metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
hvu00230 Purine metabolism 2
hvu01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 3
bdi03040 Spliceosome 3
bdi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 3
cre04120 Ubiquitin mediated proteolysis 2
cre03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100257353 100243203 837708 832055 828808 100813616 100785454 100801562 103837516 103839291 103869491 18104937 18095820 18097813 11446957 25486138 25482078 107926276 107920130 107942660 106410514 125584144 125609228 102608432 102613263 101255948 101254975 101250426 102595348 102590727 102583610 107774489 107831077 107827228 4344847 4331788 9270800 103628560 100273450 103653663 123052545 123104011 123112245 123427909 123426861 123425891 8057438 8063033 8066818 100831361 100840332 100845432 66056515
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