ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4342320	homeobox protein knotted-1-like 12
tae-r.2	123045058	homeobox protein knotted-1-like 12
tae-r.2	123110107	homeobox protein knotted-1-like 10
tae-r.2	123113454	homeobox protein rough sheath 1
hvu-r.1	123415825	homeobox protein knotted-1-like 10
bdi-r.1	100833629	homeobox protein knotted-1-like 4
bdi-r.1	100832589	homeobox protein rough sheath 1
zma-u.5	606458	knotted related homeobox 8
zma-u.5	100283277	homeobox protein rough sheath 1
zma-u.5	100283504	KNOX1 domain containing protein
sbi-r.1	8054187	homeobox protein knotted-1-like 4
sbi-r.1	8060322	homeobox protein knotted-1-like 1
sbi-r.1	8084184	homeobox protein rough sheath 1
ath-u.5	STM	KNOX/ELK homeobox transcription factor
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT1	homeobox knotted-like protein
gma-u.5	100791704	homeobox protein knotted-1-like LET6
gma-u.5	100805837	homeobox protein SBH1-like
gma-u.5	100785764	homeobox protein knotted-1-like 6
sly-u.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN4	knotted homeodomain protein 4
bra-r.6	103840767	homeobox protein knotted-1-like 6
bra-r.6	103852657	homeobox protein knotted-1-like 2
bra-r.6	103835665	homeobox protein knotted-1-like 6
vvi-u.5	100255834	homeobox protein knotted-1-like 2
vvi-u.5	100264808	homeobox protein knotted-1-like 1
ppo-u.5	7460768	homeobox protein knotted-1-like 6
ppo-u.5	112327500	homeobox protein knotted-1-like 1
ppo-u.5	18103792	homeobox protein knotted-1-like 2
mtr-u.5	11415594	homeobox protein knotted-1-like 6
mtr-u.5	25482021	homeotic protein knotted-1
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
ghi-r.1	107927170	homeobox protein knotted-1-like 1
bna-r.1	106420956	homeobox protein knotted-1-like 6
bna-r.1	106434220	homeobox protein knotted-1-like 6
bna-r.1	106414253	homeobox protein knotted-1-like 6
sot-r.1	POTH15	homeobox protein knotted-1-like LET6-like
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
cit-r.1	102614106	homeobox protein SHOOT MERISTEMLESS
cit-r.1	102609444	homeobox protein knotted-1-like LET6
nta-r.1	107808713	homeobox protein knotted-1-like 1
nta-r.1	107817797	homeobox protein knotted-1-like 1

Top 50 coexpressed genes to 4342320 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4342320 (osa-u.5 coexpression data)

CoexMap"136355793"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(380 genes)

IEA

GO CC

GO MF

GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding	(221 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(257 genes)	IEA

Protein

XP_066164912.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 4

(predict for XP_066164912.1)

Subcellular
localization
TargetP

other 8

(predict for XP_066164912.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4342320	tae-r.2 for 123045058	tae-r.2 for 123110107	tae-r.2 for 123113454	hvu-r.1 for 123415825	bdi-r.1 for 100833629	bdi-r.1 for 100832589	zma-u.5 for 606458	zma-u.5 for 100283277	zma-u.5 for 100283504	sbi-r.1 for 8054187	sbi-r.1 for 8060322	sbi-r.1 for 8084184	ath-u.5 for STM	ath-u.5 for KNAT6	ath-u.5 for KNAT1	gma-u.5 for 100791704	gma-u.5 for 100805837	gma-u.5 for 100785764	sly-u.5 for T6	sly-u.5 for KN4	bra-r.6 for 103840767	bra-r.6 for 103852657	bra-r.6 for 103835665	vvi-u.5 for 100255834	vvi-u.5 for 100264808	ppo-u.5 for 7460768	ppo-u.5 for 112327500	ppo-u.5 for 18103792	mtr-u.5 for 11415594	mtr-u.5 for 25482021	ghi-r.1 for 107933765	ghi-r.1 for 107930537	ghi-r.1 for 107927170	bna-r.1 for 106420956	bna-r.1 for 106434220	bna-r.1 for 106414253	sot-r.1 for POTH15	sot-r.1 for 102579398	cit-r.1 for 102614106	cit-r.1 for 102609444	nta-r.1 for 107808713	nta-r.1 for 107817797

Ortholog

Ortholog ID: 275

Species

osa

tae

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

STM

KNAT6

KNAT2

LOC100803095

LOC100786454

LOC100800822

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

homeobox protein KNOX3

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

liguleless 4

knotted related homeobox 5

liguleless 3

homeobox protein knotted-1-like 10

homeobox protein knotted-1-like 7

homeobox protein rough sheath 1

KNOX/ELK homeobox transcription factor

homeobox protein knotted-1-like 6

homeobox knotted-like protein

homeobox protein knotted-1-like

homeobox protein knotted-1-like 6

homeotic protein knotted-1

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like LET6

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein SBH1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like LET6-like

homeotic protein knotted-1

homeobox protein SHOOT MERISTEMLESS

homeobox protein knotted-1-like LET6

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

4342320

4337701

123180293

123180294

123090945

100832589

100839205

541960

541961

542487

8071273

8059967

8059916

842534

838946

843388

100803095

100786454

100800822

543520

544007

544029

103852657

103835665

103858468

100255834

100248152

112327500

7478899

11415594

25482021

11406488

107924993

107938311

107895047

106404904

125600843

102581859

102601860

102614106

102609444

102615394

107817797

107781949

The preparation time of this page was 0.2 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	2	3	3	3	3	2	3	2	3	2	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4342320 (osa-u.5 coexpression data)

Top 50 enrichment test to 4342320 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**