ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
osa-u.5	4325347	GTP-binding protein YPTM2
osa-u.5	4330181	GTP-binding protein YPTM2
osa-u.5	4337556	GTP-binding protein YPTM1
tae-r.2	123060038	GTP-binding protein YPTM2-like
hvu-r.1	123443698	ras-related protein RIC1
hvu-r.1	123442626	GTP-binding protein YPTM2
hvu-r.1	123442625	GTP-binding protein YPTM2-like
bdi-r.1	100842421	GTP-binding protein YPTM2
bdi-r.1	100841613	GTP-binding protein YPTM2
bdi-r.1	100835716	ras-related protein RABD1
zma-u.5	100502159	uncharacterized LOC100502159
zma-u.5	542531	ypt homolog 1
zma-u.5	103629287	ras-related protein RABD2c
sbi-r.1	8065289	ras-related protein RABD2c
sbi-r.1	8073972	GTP-binding protein YPTM2
ath-u.5	ATFP8	Ras-related small GTP-binding family protein
ath-u.5	RA-5	RAS 5
ath-u.5	RAB1A	RAB GTPase homolog 1A
gma-u.5	100306147	uncharacterized LOC100306147
gma-u.5	SRA2	GTP binding protein
gma-u.5	100813403	ras-related protein RABD2a
sly-u.5	101252882	ras-related protein RABD2a
sly-u.5	101255135	ras-related protein Rab-1A
sly-u.5	Rab1C	small GTP-binding protein
bra-r.6	103843860	ras-related protein RABD2a
bra-r.6	103834020	ras-related protein RABD2c
bra-r.6	103839540	ras-related protein RABD2b
vvi-u.5	100254021	ras-related protein RABD1
vvi-u.5	100245986	GTP-binding protein YPTM2
vvi-u.5	100248422	GTP-binding protein YPTM2
ppo-u.5	7461998	GTP-binding protein YPTM2
ppo-u.5	18094572	GTP-binding protein YPTM2
ppo-u.5	18098341	ras-related protein RABD1
mtr-u.5	25500061	ras-related protein RABD2a
mtr-u.5	11434813	ras-related protein RABD1
mtr-u.5	11442372	ras-related protein RABD2a
ghi-r.1	107908556	ras-related protein RABD1
ghi-r.1	107912205	GTP-binding protein YPTM2
ghi-r.1	107920694	ras-related protein RABD2a
bna-r.1	106360829	ras-related protein RABD2c
bna-r.1	106441090	ras-related protein RABD2c
bna-r.1	106434172	ras-related protein RABD2a
sot-r.1	102584742	ras-related protein RABD1
sot-r.1	102602373	ras-related protein RABD2a
sot-r.1	102594778	ras-related protein RABD2a-like
cit-r.1	102613041	ras-related protein RABD1
cit-r.1	102624523	ras-related protein RABD2a
cit-r.1	102628383	GTP-binding protein YPTM2-like
nta-r.1	107815015	GTP-binding protein YPTM2
nta-r.1	107776243	GTP-binding protein YPTM2
nta-r.1	107779090	ras-related protein RABD2a-like
cre-r.1	CHLRE_12g560150v5	uncharacterized protein

Top 50 coexpressed genes to 4325347 (osa-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 4325347 (osa-u.5 coexpression data)

CoexMap"136356281"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016192 [list] [network] vesicle-mediated transport

(471 genes)

IEA

GO CC

GO MF

GO:0003924 [list] [network] GTPase activity	(183 genes)	IEA
GO:0005525 [list] [network] GTP binding	(207 genes)	IEA

Protein

XP_066166105.1 [sequence] [blastp]
XP_066166106.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, nucl 3, extr 2, cyto_nucl 2	(predict for XP_066166105.1)
chlo 4, nucl 2, extr 2, chlo_mito 2	(predict for XP_066166106.1)

Subcellular
localization
TargetP

scret 8, other 3	(predict for XP_066166105.1)
scret 8, other 4	(predict for XP_066166106.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	osa-u.5 for 4325347	osa-u.5 for 4330181	osa-u.5 for 4337556	tae-r.2 for 123060038	hvu-r.1 for 123443698	hvu-r.1 for 123442626	hvu-r.1 for 123442625	bdi-r.1 for 100842421	bdi-r.1 for 100841613	bdi-r.1 for 100835716	zma-u.5 for 100502159	zma-u.5 for 542531	zma-u.5 for 103629287	sbi-r.1 for 8065289	sbi-r.1 for 8073972	ath-u.5 for ATFP8	ath-u.5 for RA-5	ath-u.5 for RAB1A	gma-u.5 for 100306147	gma-u.5 for SRA2	gma-u.5 for 100813403	sly-u.5 for 101252882	sly-u.5 for 101255135	sly-u.5 for Rab1C	bra-r.6 for 103843860	bra-r.6 for 103834020	bra-r.6 for 103839540	vvi-u.5 for 100254021	vvi-u.5 for 100245986	vvi-u.5 for 100248422	ppo-u.5 for 7461998	ppo-u.5 for 18094572	ppo-u.5 for 18098341	mtr-u.5 for 25500061	mtr-u.5 for 11434813	mtr-u.5 for 11442372	ghi-r.1 for 107908556	ghi-r.1 for 107912205	ghi-r.1 for 107920694	bna-r.1 for 106360829	bna-r.1 for 106441090	bna-r.1 for 106434172	sot-r.1 for 102584742	sot-r.1 for 102602373	sot-r.1 for 102594778	cit-r.1 for 102613041	cit-r.1 for 102624523	cit-r.1 for 102628383	nta-r.1 for 107815015	nta-r.1 for 107776243	nta-r.1 for 107779090	cre-r.1 for CHLRE_12g560150v5

Ortholog

Ortholog ID: 494

Species

osa

tae

hvu

bdi

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

ATFP8

RA-5

RAB1C

LOC100813403

LOC100818694

RAB7P

Rab1C

Rab1B

Rab1A

Function^*

GTP-binding protein YPTM1

ras-related protein RIC1-like

ras-related protein RIC1

ras-related protein RABD1

GTP-binding protein YPTM2

GTP-binding protein YPTM2-like

ras-related protein RABD1-like

GTP-binding protein YPTM2

ras-related protein RABD1

GTP-binding protein YPTM1

uncharacterized LOC100502159

ypt homolog 1

Ras protein RIC1

ras-related protein RABD2c

ras-related protein RIC1

Ras-related small GTP-binding family protein

RAS 5

RAB GTPase homolog 1C

ras-related protein RABD2a

GTP-binding protein YPTM2

ras-related protein RABD1-like

small GTP-binding protein

ras-related protein RABD2a

ras-related protein RABD2b

ras-related protein RABD2c

ras-related protein RABD1

GTP-binding protein YPTM2

ras-related protein RABD1

GTP-binding protein YPTM2

ras-related protein RABD2a

ras-related protein RABD1

GTP-binding protein YPTM2

ras-related protein RABD2b

ras-related protein RABD1

ras-related protein RABD2a

GTP-binding protein YPTM2

ras-related protein RABD2a-like

ras-related protein RABD2a

GTP-binding protein YPTM2-like

GTP-binding protein YPTM2

ras-related protein RABD2a-like

ras-related protein RABD1

ras-related protein RIC1-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04136	Autophagy - other	4
osa00600	Sphingolipid metabolism	2
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	4
osa04136	Autophagy - other	4
osa04145	Phagosome	2
osa04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	2
tae04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	5
tae04144	Endocytosis	4
tae04145	Phagosome	4
tae04148	Efferocytosis	4
tae00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	6
bdi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi01240	Biosynthesis of cofactors	2
bdi04145	Phagosome	2
bdi04148	Efferocytosis	2
bdi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00240	Pyrimidine metabolism	2
zma01232	Nucleotide metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	7
zma04144	Endocytosis	3
zma04145	Phagosome	2
zma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi00071	Fatty acid degradation	3
sbi00410	beta-Alanine metabolism	3
sbi00592	alpha-Linolenic acid metabolism	3
sbi00640	Propanoate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3
sbi04120	Ubiquitin mediated proteolysis	3
sbi04144	Endocytosis	2
sbi04146	Peroxisome	2
sbi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	5
ath04136	Autophagy - other	3
ath04144	Endocytosis	2
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	5
ath03050	Proteasome	4
ath04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma04145	Phagosome	3
gma04148	Efferocytosis	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00071	Fatty acid degradation	2
gma00280	Valine, leucine and isoleucine degradation	2
gma00592	alpha-Linolenic acid metabolism	2
gma01040	Biosynthesis of unsaturated fatty acids	2
gma01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma00510	N-Glycan biosynthesis	2
gma00513	Various types of N-glycan biosynthesis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	5
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3
sly04070	Phosphatidylinositol signaling system	3
sly04075	Plant hormone signal transduction	3
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00190	Oxidative phosphorylation	4
bra03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	4
bra04070	Phosphatidylinositol signaling system	4
bra04075	Plant hormone signal transduction	4
bra04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	4
vvi04145	Phagosome	2
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	5
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo00190	Oxidative phosphorylation	4
ppo03083	Polycomb repressive complex	2
ppo04120	Ubiquitin mediated proteolysis	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	3
mtr04120	Ubiquitin mediated proteolysis	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04144	Endocytosis	3
mtr04141	Protein processing in endoplasmic reticulum	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	4
ghi04142	Lysosome	4
ghi04145	Phagosome	4
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	3
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna01240	Biosynthesis of cofactors	2
bna04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna01240	Biosynthesis of cofactors	2
bna04141	Protein processing in endoplasmic reticulum	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	5
sot00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	6
sot04145	Phagosome	5
sot04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	3
cit04144	Endocytosis	2
cit04145	Phagosome	2
cit04148	Efferocytosis	2
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04130	SNARE interactions in vesicular transport	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	6
nta04145	Phagosome	6
nta04142	Lysosome	4
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	3
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	5

Expression

Expression pattern

Entrez Gene ID^*

4337556

4324675

123061292

123179836

123442626

123442625

123426463

100841613

100835716

100829353

100502159

542531

100191848

8065289

8078596

820345

837023

827468

100813403

100818694

100796206

544012

544011

544010

103843860

103839540

103855466

100254021

100245986

100248422

7461998

18111134

7477801

25500061

11434813

25493604

107912205

107922713

106406928

106381870

106349360

102602373

102596483

102587256

102624523

102628383

102609189

107779090

107784791

107813681

5728675

The preparation time of this page was 0.2 [sec].


Species	osa	tae	hvu	bdi	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 4325347 (osa-u.5 coexpression data)

Top 50 enrichment test to 4325347 (osa-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**