ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
nta-r.1	142182137	protein ROS1A-like
nta-r.1	107813371	protein ROS1-like
nta-r.1	107813452	protein ROS1A-like
nta-r.1	107816337	protein ROS1A
sly-u.5	DML2	DNA demethylase 2
sly-u.5	DML1	DNA demethylase1
sly-u.5	DML4	DNA demethylase 4
sot-r.1	102597039	protein ROS1-like
sot-r.1	102594068	transcriptional activator DEMETER-like
sot-r.1	102597023	protein ROS1-like
ath-u.5	DML1	demeter-like 1
ath-u.5	DML2	demeter-like 2
ath-u.5	DML3	demeter-like protein 3
gma-u.5	100779756	DNA glycosylase/AP lyase ROS1
gma-u.5	100787368	protein ROS1A
bra-r.6	103867278	DNA glycosylase/AP lyase ROS1
bra-r.6	103842475	DEMETER-like protein 3
bra-r.6	103847276	transcriptional activator DEMETER
vvi-u.5	100247223	transcriptional activator DEMETER
vvi-u.5	100257983	transcriptional activator DEMETER
ppo-u.5	7479830	transcriptional activator DEMETER
ppo-u.5	18096903	DEMETER-like protein 3
mtr-u.5	25483895	DNA glycosylase/AP lyase ROS1
mtr-u.5	25485813	transcriptional activator DEMETER
ghi-r.1	107936635	transcriptional activator DEMETER
ghi-r.1	107922077	transcriptional activator DEMETER
ghi-r.1	107921883	transcriptional activator DEMETER
bna-r.1	106438567	DEMETER-like protein 3
bna-r.1	106396066	DNA glycosylase/AP lyase ROS1
bna-r.1	106372500	transcriptional activator DEMETER
cit-r.1	102612881	DNA glycosylase/AP lyase ROS1
cit-r.1	102619180	DNA glycosylase/AP lyase ROS1-like
cit-r.1	DEMETER	transcriptional activator DEMETER
osa-u.5	9271145	protein ROS1A-like
osa-u.5	4338944	protein ROS1C-like
zma-u.5	103630409	Protein ROS1
zma-u.5	109939959	protein ROS1A
zma-u.5	100280151	uncharacterized LOC100280151
tae-r.2	123076835	DNA glycosylase/AP lyase ROS1
tae-r.2	123064105	protein ROS1C
tae-r.2	123059833	transcriptional activator DEMETER
hvu-r.1	123452140	protein ROS1A-like
hvu-r.1	123446041	protein ROS1C-like
hvu-r.1	123442421	protein ROS1A-like
sbi-r.1	8061201	protein ROS1
sbi-r.1	8072510	uncharacterized LOC8072510
sbi-r.1	8074739	protein ROS1
bdi-r.1	100823585	protein ROS1
bdi-r.1	100830449	uncharacterized LOC100830449
bdi-r.1	100823274	uncharacterized LOC100823274
cre-r.1	CHLRE_07g355466v5	uncharacterized protein

Top 50 coexpressed genes to 142182137 (nta-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 142182137 (nta-r.1 coexpression data)

CoexMap"142182137"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0141166 [list] [network] chromosomal 5-methylcytosine DNA demethylation pathway	(11 genes)	IEA
GO:0006284 [list] [network] base-excision repair	(71 genes)	IEA

GO CC

GO MF

GO:0035514 [list] [network] DNA demethylase activity	(14 genes)	IEA
GO:0019104 [list] [network] DNA N-glycosylase activity	(50 genes)	IEA
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding	(60 genes)	IEA

Protein

XP_075112213.1 [sequence] [blastp]
XP_075112214.1 [sequence] [blastp]
XP_075112215.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_075112213.1)
nucl 9	(predict for XP_075112214.1)
nucl 9	(predict for XP_075112215.1)

Subcellular
localization
TargetP

other 3, chlo 3	(predict for XP_075112213.1)
other 3, chlo 3	(predict for XP_075112214.1)
other 3, chlo 3	(predict for XP_075112215.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	nta-r.1 for 142182137	nta-r.1 for 107813371	nta-r.1 for 107813452	nta-r.1 for 107816337	sly-u.5 for DML2	sly-u.5 for DML1	sly-u.5 for DML4	sot-r.1 for 102597039	sot-r.1 for 102594068	sot-r.1 for 102597023	ath-u.5 for DML1	ath-u.5 for DML2	ath-u.5 for DML3	gma-u.5 for 100779756	gma-u.5 for 100787368	bra-r.6 for 103867278	bra-r.6 for 103842475	bra-r.6 for 103847276	vvi-u.5 for 100247223	vvi-u.5 for 100257983	ppo-u.5 for 7479830	ppo-u.5 for 18096903	mtr-u.5 for 25483895	mtr-u.5 for 25485813	ghi-r.1 for 107936635	ghi-r.1 for 107922077	ghi-r.1 for 107921883	bna-r.1 for 106438567	bna-r.1 for 106396066	bna-r.1 for 106372500	cit-r.1 for 102612881	cit-r.1 for 102619180	cit-r.1 for DEMETER	osa-u.5 for 9271145	osa-u.5 for 4338944	zma-u.5 for 103630409	zma-u.5 for 109939959	zma-u.5 for 100280151	tae-r.2 for 123076835	tae-r.2 for 123064105	tae-r.2 for 123059833	hvu-r.1 for 123452140	hvu-r.1 for 123446041	hvu-r.1 for 123442421	sbi-r.1 for 8061201	sbi-r.1 for 8072510	sbi-r.1 for 8074739	bdi-r.1 for 100823585	bdi-r.1 for 100830449	bdi-r.1 for 100823274	cre-r.1 for CHLRE_07g355466v5

Ortholog

Ortholog ID: 951

Species

nta

sly

sot

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC107813452

LOC107760412

DML2

DML1

DML4

LOC102594068

LOC102597023

LOC102605689

DML1

DML3

DME

DEMETER

Function^*

protein ROS1A-like

DNA glycosylase/AP lyase ROS1

DNA demethylase 2

DNA demethylase1

DNA demethylase 4

transcriptional activator DEMETER-like

protein ROS1-like

protein ROS1

demeter-like 1

demeter-like protein 3

HhH-GPD base excision DNA repair family protein

DNA glycosylase/AP lyase ROS1

DEMETER-like protein 3

transcriptional activator DEMETER

DEMETER-like protein 3

transcriptional activator DEMETER

DNA glycosylase/AP lyase ROS1

transcriptional activator DEMETER

uncharacterized LOC107902775

transcriptional activator DEMETER

DNA glycosylase/AP lyase ROS1-like

transcriptional activator DEMETER-like

DNA glycosylase/AP lyase ROS1

DNA glycosylase/AP lyase ROS1-like

transcriptional activator DEMETER

protein ROS1A-like

protein ROS1C-like

Protein ROS1

uncharacterized LOC100280151

uncharacterized LOC100382817

protein ROS1C

transcriptional activator DEMETER

protein ROS1C

protein ROS1A-like

protein ROS1C-like

protein ROS1A-like

protein ROS1

uncharacterized LOC8072510

protein ROS1

uncharacterized LOC100841571

protein ROS1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03082	ATP-dependent chromatin remodeling	2
nta03022	Basal transcription factors	2
nta04120	Ubiquitin mediated proteolysis	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00310	Lysine degradation	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	2
ath04142	Lysosome	2
ath04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	3
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	3
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00620	Pyruvate metabolism	3
bra01200	Carbon metabolism	3
bra00010	Glycolysis / Gluconeogenesis	2
bra00020	Citrate cycle (TCA cycle)	2
bra00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04142	Lysosome	3
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2
mtr04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03440	Homologous recombination	2
ghi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03440	Homologous recombination	2
ghi03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3

Expression

Expression pattern

Entrez Gene ID^*

107813452

107760412

101263652

101244311

101251080

102594068

102597023

102605689

818224

829552

830335

100788292

100806794

103867278

103842475

103847276

100247223

100257983

7479830

18096903

7491643

25483895

107918161

107902775

107959385

106372500

125609294

106433122

102612881

102619180

102630316

9271145

4338944

103630409

100280151

100382817

123064105

123059833

123141492

123452140

123446041

123442421

8061201

8072510

8056049

100823585

100841571

100844361

66054234

The preparation time of this page was 0.1 [sec].


Species	nta	sly	sot	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	2	3	2	2	2	3	3	3	2	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 142182137 (nta-r.1 coexpression data)

Top 50 enrichment test to 142182137 (nta-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**