ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7465142	phenylacetaldehyde reductase
ppo-u.5	7482297	phenylacetaldehyde reductase
ppo-u.5	7482328	phenylacetaldehyde reductase
gma-u.5	100804772	phenylacetaldehyde reductase
gma-u.5	100804704	dihydroflavonol-4-reductase-like
gma-u.5	100799994	cinnamoyl-CoA reductase 1
mtr-u.5	11414132	phenylacetaldehyde reductase
mtr-u.5	11415612	phenylacetaldehyde reductase
mtr-u.5	11424763	cinnamoyl-CoA reductase 1
ath-u.5	AT1G66800	NAD(P)-binding Rossmann-fold superfamily protein
ath-u.5	CCR2	cinnamoyl coa reductase
vvi-u.5	100265262	phenylacetaldehyde reductase
vvi-u.5	100267178	phenylacetaldehyde reductase
vvi-u.5	100267759	phenylacetaldehyde reductase
sly-u.5	ADH	alcohol dehydrogenase-like
sly-u.5	PAR2	phenylacetaldehyde reductase
sly-u.5	CCR2	cinnamoyl-CoA reductase
osa-u.5	4347074	cinnamoyl-CoA reductase 1
osa-u.5	4346438	cinnamoyl-CoA reductase 1
osa-u.5	4323945	phenylacetaldehyde reductase
zma-u.5	542463	cinnamoyl CoA reductase 1
zma-u.5	100382657	Cinnamoyl-CoA reductase 1
zma-u.5	100284029	uncharacterized LOC100284029

Top 50 coexpressed genes to 7465142 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7465142 (ppo-u.5 coexpression data)

CoexMap"18094264"

[Cytoscape]

Annotation

functional annotation

KEGG

pop00940 [list] [network] Phenylpropanoid biosynthesis (207 genes)

GO BP

GO CC

GO MF

GO:0016616 [list] [network] oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

(237 genes)

IEA

Protein

XP_024437390.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, cyto 2, plas 1

(predict for XP_024437390.2)

Subcellular
localization
TargetP

other 6

(predict for XP_024437390.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7465142 .	ppo-u.5 for 7482297 .	ppo-u.5 for 7482328 .	gma-u.5 for 100804772 .	gma-u.5 for 100804704 .	gma-u.5 for 100799994 .	mtr-u.5 for 11414132 .	mtr-u.5 for 11415612 .	mtr-u.5 for 11424763 .	ath-u.5 for AT1G66800 .	ath-u.5 for CCR2 .	vvi-u.5 for 100265262 .	vvi-u.5 for 100267178 .	vvi-u.5 for 100267759 .	sly-u.5 for ADH .	sly-u.5 for PAR2 .	sly-u.5 for CCR2 .	osa-u.5 for 4347074 .	osa-u.5 for 4346438 .	osa-u.5 for 4323945 .	zma-u.5 for 542463 .	zma-u.5 for 100382657 .	zma-u.5 for 100284029 .

Ortholog

Ortholog ID: 276

Species

ath

gma

sly

osa

zma

bra

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

CCR1

CCR2

Function^*

cinnamoyl coa reductase 1

NAD(P)-binding Rossmann-fold superfamily protein

cinnamoyl-CoA reductase 1

bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like

cinnamoyl-CoA reductase

phenylacetaldehyde reductase

cinnamoyl-CoA reductase 1

cinnamoyl CoA reductase 2

uncharacterized LOC100284029

cinnamoyl-CoA reductase 1

phenylacetaldehyde reductase

cinnamoyl-CoA reductase 1

phenylacetaldehyde reductase-like

phenylacetaldehyde reductase

cinnamoyl-CoA reductase 2

phenylacetaldehyde reductase

uncharacterized protein

cinnamoyl-CoA reductase 1

cinnamoyl CoA reductase

cinnamoyl-CoA reductase 1-like

cinnamoyl-CoA reductase 1

cinnamoyl-CoA reductase 1-like

cinnamoyl-CoA reductase 1

cinnamoyl-CoA reductase 2

cinnamoyl-CoA reductase CAD2-like

cinnamoyl-CoA reductase 1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	13
ath00941	Flavonoid biosynthesis	4
ath00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4
ath00360	Phenylalanine metabolism	3
ath00130	Ubiquinone and other terpenoid-quinone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00500	Starch and sucrose metabolism	2
ath00260	Glycine, serine and threonine metabolism	2
ath00071	Fatty acid degradation	2
ath04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	2
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	16
gma00941	Flavonoid biosynthesis	5
gma00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
gma00130	Ubiquinone and other terpenoid-quinone biosynthesis	5
gma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00020	Citrate cycle (TCA cycle)	2
sly00620	Pyruvate metabolism	2
sly01200	Carbon metabolism	2
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	5
sly00940	Phenylpropanoid biosynthesis	4
sly04142	Lysosome	4
sly04145	Phagosome	4
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	10
osa00360	Phenylalanine metabolism	5
osa01230	Biosynthesis of amino acids	2
osa00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00940	Phenylpropanoid biosynthesis	8
osa00360	Phenylalanine metabolism	3
osa01230	Biosynthesis of amino acids	3
osa00270	Cysteine and methionine metabolism	2
osa00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	5
zma01230	Biosynthesis of amino acids	3
zma00710	Carbon fixation by Calvin cycle	3
zma00020	Citrate cycle (TCA cycle)	2
zma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	4
bra00380	Tryptophan metabolism	3
bra00630	Glyoxylate and dicarboxylate metabolism	3
bra04016	MAPK signaling pathway - plant	3
bra04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	11
ppo00941	Flavonoid biosynthesis	5
ppo00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
ppo00270	Cysteine and methionine metabolism	3
ppo00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01240	Biosynthesis of cofactors	4
mtr00230	Purine metabolism	3
mtr01200	Carbon metabolism	3
mtr00410	beta-Alanine metabolism	2
mtr00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00230	Purine metabolism	3
mtr00410	beta-Alanine metabolism	3
mtr01200	Carbon metabolism	3
mtr00240	Pyrimidine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	5
tae02010	ABC transporters	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00940	Phenylpropanoid biosynthesis	5
tae02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2
hvu00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00310	Lysine degradation	2
hvu00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00750	Vitamin B6 metabolism	4
ghi01240	Biosynthesis of cofactors	4
ghi04814	Motor proteins	4
ghi00270	Cysteine and methionine metabolism	2
ghi00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00514	Other types of O-glycan biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	7
sbi00941	Flavonoid biosynthesis	3
sbi00944	Flavone and flavonol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	10
sbi00360	Phenylalanine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01230	Biosynthesis of amino acids	9
sot00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
sot01200	Carbon metabolism	3
sot00190	Oxidative phosphorylation	2
sot00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	7
cit00941	Flavonoid biosynthesis	3
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	10
cit00941	Flavonoid biosynthesis	4
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	13
bdi00130	Ubiquinone and other terpenoid-quinone biosynthesis	5
bdi00360	Phenylalanine metabolism	5
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	6
nta04144	Endocytosis	2
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2
nta00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	14
nta00130	Ubiquinone and other terpenoid-quinone biosynthesis	4
nta04075	Plant hormone signal transduction	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

838165

832064

100811528

100789070

778359

101264046

4346438

4345689

542735

100284029

103843352

7493223

11409978

11415612

123167495

123167496

123449892

123395121

107959302

107952398

106429710

106416147

5719613

5727897

8077848

8076207

102577453

102584718

102615114

102615391

100832790

100831271

107808266

107767921

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	3	3	3	2	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7465142 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7465142 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**