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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18094860   protein ROOT HAIR DEFECTIVE 3 
 ppo-r.4   18094860   protein ROOT HAIR DEFECTIVE 3 
 ppo-u.5   18096753   protein ROOT HAIR DEFECTIVE 3 
 ppo-u.5   7456688   protein ROOT HAIR DEFECTIVE 3 homolog 2 
 gma-u.5   100800151   protein ROOT HAIR DEFECTIVE 3 homolog 2 
 mtr-u.5   25486287   protein ROOT HAIR DEFECTIVE 3 homolog 2 
 mtr-u.5   25500448   protein ROOT HAIR DEFECTIVE 3 
 ath-u.5   RHD3   Root hair defective 3 GTP-binding protein (RHD3) 
 ath-u.5   RL2   Root hair defective 3 GTP-binding protein (RHD3) 
 vvi-u.5   100241105   protein ROOT HAIR DEFECTIVE 3 homolog 2 
 vvi-u.5   100254873   protein ROOT HAIR DEFECTIVE 3 
 sly-u.5   101245707   protein ROOT HAIR DEFECTIVE 3 homolog 2-like 
 sly-u.5   101253164   protein ROOT HAIR DEFECTIVE 3-like 
 sly-u.5   101266805   protein ROOT HAIR DEFECTIVE 3 
 osa-u.5   4350788   protein ROOT HAIR DEFECTIVE 3 homolog 2-like 
 osa-u.5   4326314   protein ROOT HAIR DEFECTIVE 3-like 
 zma-u.5   103650479   protein ROOT HAIR DEFECTIVE 3 homolog 1 
 zma-u.5   103637341   protein ROOT HAIR DEFECTIVE 3 
 zma-u.5   100285385   uncharacterized LOC100285385 

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Top 50 coexpressed genes to 18094860 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18094860 (ppo-u.5 coexpression data)

CoexMap"18094860"


ppoLOC18094860 | Entrez gene ID : 18094860    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 2 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016320 [list] [network] endoplasmic reticulum membrane fusion  (8 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (618 genes)  IEA  
GO MF
GO:0003924 [list] [network] GTPase activity  (264 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (290 genes)  IEA  
Protein XP_024449600.2 [sequence] [blastp]
XP_052305077.1 [sequence] [blastp]
XP_052305086.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  golg 2,  cysk_plas 2,  E.R._plas 2,  mito_plas 2  (predict for XP_024449600.2)
plas 4,  golg 2,  cysk_plas 2,  E.R._plas 2,  mito_plas 2  (predict for XP_052305077.1)
plas 6,  chlo 1,  cyto 1,  extr 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  cyto_E.R. 1  (predict for XP_052305086.1)
Subcellular
localization
TargetP
other 9  (predict for XP_024449600.2)
other 9  (predict for XP_052305077.1)
other 9  (predict for XP_052305086.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18094860

.
ppo-r.4
for
18094860

.
ppo-u.5
for
18096753

.
ppo-u.5
for
7456688

.
gma-u.5
for
100800151

.
mtr-u.5
for
25486287

.
mtr-u.5
for
25500448

.
ath-u.5
for
RHD3

.
ath-u.5
for
RL2

.
vvi-u.5
for
100241105

.
vvi-u.5
for
100254873

.
sly-u.5
for
101245707

.
sly-u.5
for
101253164

.
sly-u.5
for
101266805

.
osa-u.5
for
4350788

.
osa-u.5
for
4326314

.
zma-u.5
for
103650479

.
zma-u.5
for
103637341

.
zma-u.5
for
100285385

.


Ortholog ID: 1461
Species ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RHD3 LOC100791046 LOC101245707 LOC101253164 LOC4350788 LOC4326314 LOC103637341 LOC103645055 LOC103859541 LOC103859545 LOC100254873 LOC100241105 LOC18094860 LOC18096753 LOC25500448 LOC25486287 LOC123069972 LOC123078436 LOC123443749 LOC123403912 LOC107891723 LOC107906096 LOC106391325 CHLRE_10g439600v5 LOC8084550 LOC8076660 LOC102596203 LOC102588648 LOC102622723 LOC102625846 LOC100844574 LOC100832066 LOC107816706 LOC107831965
Function* Root hair defective 3 GTP-binding protein (RHD3) protein ROOT HAIR DEFECTIVE 3 homolog 2 protein ROOT HAIR DEFECTIVE 3 homolog 2-like protein ROOT HAIR DEFECTIVE 3-like protein ROOT HAIR DEFECTIVE 3 homolog 2-like protein ROOT HAIR DEFECTIVE 3-like protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 1 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 2 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 2 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 2-like protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 2 uncharacterized protein protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 1 protein ROOT HAIR DEFECTIVE 3-like protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 2 protein ROOT HAIR DEFECTIVE 3-like protein ROOT HAIR DEFECTIVE 3 protein ROOT HAIR DEFECTIVE 3 homolog 2 protein ROOT HAIR DEFECTIVE 3 homolog 2 protein ROOT HAIR DEFECTIVE 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma03018 RNA degradation 2
gma04142 Lysosome 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 4
sly01230 Biosynthesis of amino acids 3
sly02010 ABC transporters 2
sly00260 Glycine, serine and threonine metabolism 2
sly00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 4
zma04141 Protein processing in endoplasmic reticulum 3
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo04120 Ubiquitin mediated proteolysis 2
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 8
ppo00020 Citrate cycle (TCA cycle) 7
ppo01210 2-Oxocarboxylic acid metabolism 7
ppo04141 Protein processing in endoplasmic reticulum 4
ppo00620 Pyruvate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00020 Citrate cycle (TCA cycle) 4
mtr01200 Carbon metabolism 4
mtr01210 2-Oxocarboxylic acid metabolism 4
mtr00190 Oxidative phosphorylation 4
mtr04145 Phagosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
tae00061 Fatty acid biosynthesis 3
tae00071 Fatty acid degradation 3
tae01212 Fatty acid metabolism 3
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 4
tae04144 Endocytosis 3
tae00562 Inositol phosphate metabolism 2
tae04070 Phosphatidylinositol signaling system 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 3
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi00620 Pyruvate metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi00710 Carbon fixation by Calvin cycle 2
ghi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 4
ghi00240 Pyrimidine metabolism 4
ghi01232 Nucleotide metabolism 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 3
sbi04142 Lysosome 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 3
sot04144 Endocytosis 3
sot05100 Bacterial invasion of epithelial cells 3
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 4
cit04141 Protein processing in endoplasmic reticulum 3
cit04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi00190 Oxidative phosphorylation 2
bdi04142 Lysosome 2
bdi04145 Phagosome 2
bdi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 2
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
nta00010 Glycolysis / Gluconeogenesis 2
nta00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820600 100791046 101245707 101253164 4350788 4326314 103637341 103645055 103859541 103859545 100254873 100241105 18094860 18096753 25500448 25486287 123069972 123078436 123443749 123403912 107891723 107906096 106391325 5715941 8084550 8076660 102596203 102588648 102622723 102625846 100844574 100832066 107816706 107831965
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