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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18095012   cleavage and polyadenylation specificity factor subunit 2 
 ppo-r.4   18095012   cleavage and polyadenylation specificity factor subunit 2 
 gma-u.5   100796817   cleavage and polyadenylation specificity factor subunit 2 
 gma-u.5   100777002   cleavage and polyadenylation specificity factor subunit 2 
 mtr-u.5   25483257   cleavage and polyadenylation specificity factor subunit 2 
 ath-u.5   CPSF100   cleavage and polyadenylation specificity factor 100 
 vvi-u.5   100267865   cleavage and polyadenylation specificity factor subunit 2 
 sly-u.5   101254167   cleavage and polyadenylation specificity factor subunit 2 
 osa-u.5   4347905   cleavage and polyadenylation specificity factor subunit 2-like 
 zma-u.5   IDP798   Cleavage and polyadenylation specificity factor subunit 2 

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Top 50 coexpressed genes to 18095012 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18095012 (ppo-u.5 coexpression data)

CoexMap"18095012"


ppoLOC18095012 | Entrez gene ID : 18095012    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO:0006398 [list] [network] mRNA 3'-end processing by stem-loop binding and cleavage  (3 genes)  IEA  
GO CC
GO:0005847 [list] [network] mRNA cleavage and polyadenylation specificity factor complex  (10 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_006369487.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 8,  chlo 1,  nucl 1,  vacu 1  (predict for XP_006369487.2)
Subcellular
localization
TargetP
other 8  (predict for XP_006369487.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18095012

.
ppo-r.4
for
18095012

.
gma-u.5
for
100796817

.
gma-u.5
for
100777002

.
mtr-u.5
for
25483257

.
ath-u.5
for
CPSF100

.
vvi-u.5
for
100267865

.
sly-u.5
for
101254167

.
osa-u.5
for
4347905

.
zma-u.5
for
IDP798

.


Ortholog ID: 9689
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol CPSF100 LOC100777002 LOC100796817 LOC101254167 LOC4347905 IDP798 LOC103874248 LOC100267865 LOC18095012 LOC25483257 LOC123113814 LOC123123322 LOC123452843 LOC121211204 LOC121224393 LOC106348299 LOC111198678 CHLRE_12g487600v5 LOC8079657 LOC102602403 LOC102616738 LOC100830470 LOC100835825 LOC107793580 LOC107766765
Function* cleavage and polyadenylation specificity factor 100 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2-like Cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 uncharacterized protein cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2 cleavage and polyadenylation specificity factor subunit 2-like cleavage and polyadenylation specificity factor subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 6
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 3
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 4
sly03015 mRNA surveillance pathway 3
sly03020 RNA polymerase 2
sly03018 RNA degradation 2
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 3
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr00510 N-Glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 8
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 6
tae03008 Ribosome biogenesis in eukaryotes 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 9
ghi00510 N-Glycan biosynthesis 8
ghi00513 Various types of N-glycan biosynthesis 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 9
ghi00510 N-Glycan biosynthesis 8
ghi00513 Various types of N-glycan biosynthesis 6
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna00261 Monobactam biosynthesis 2
bna00300 Lysine biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cre01240 Biosynthesis of cofactors 2
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 6
bdi03013 Nucleocytoplasmic transport 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 5
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
nta03015 mRNA surveillance pathway 2
nta03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832453 100777002 100796817 101254167 4347905 100285191 103874248 100267865 18095012 25483257 123113814 123123322 123452843 121211204 121224393 106348299 111198678 5716649 8079657 102602403 102616738 100830470 100835825 107793580 107766765
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