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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18096745   DEAD-box ATP-dependent RNA helicase 20 
 ppo-r.4   18096745   DEAD-box ATP-dependent RNA helicase 20 
 ppo-u.5   7458051   DEAD-box ATP-dependent RNA helicase 30 
 ppo-u.5   7453797   DEAD-box ATP-dependent RNA helicase 20 
 gma-u.5   100817092   DEAD-box ATP-dependent RNA helicase 30 
 gma-u.5   100781619   DEAD-box ATP-dependent RNA helicase 20 
 gma-u.5   100777610   DEAD-box ATP-dependent RNA helicase 30 
 mtr-u.5   11429899   DEAD-box ATP-dependent RNA helicase 20 
 mtr-u.5   25493727   DEAD-box ATP-dependent RNA helicase 20 
 ath-u.5   AT5G63120   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 ath-u.5   RH20   DEA(D/H)-box RNA helicase family protein 
 vvi-u.5   100260348   DEAD-box ATP-dependent RNA helicase 20 
 vvi-u.5   100248020   DEAD-box ATP-dependent RNA helicase 20 
 sly-u.5   101265421   DEAD-box ATP-dependent RNA helicase 20 
 sly-u.5   ER68   ethylene-responsive RNA helicase 
 osa-u.5   9271802   DEAD-box ATP-dependent RNA helicase 30-like 
 osa-u.5   9268869   DEAD-box ATP-dependent RNA helicase 20-like 
 zma-u.5   542146   DEAD box RNA helicase 1 
 zma-u.5   100274281   uncharacterized LOC100274281 

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Top 50 coexpressed genes to 18096745 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18096745 (ppo-u.5 coexpression data)

CoexMap"18096745"


ppoLOC18096745 | Entrez gene ID : 18096745    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO CC
GO:1990904 [list] [network] ribonucleoprotein complex  (740 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (68 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024453976.1 [sequence] [blastp]
XP_024453977.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  nucl 1,  mito 1,  chlo 1,  plas 1,  pero 1,  cyto_mito 1,  cysk_nucl 1  (predict for XP_024453976.1)
cyto 7,  nucl 1,  mito 1,  pero 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_024453977.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_024453976.1)
other 9  (predict for XP_024453977.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18096745

.
ppo-r.4
for
18096745

.
ppo-u.5
for
7458051

.
ppo-u.5
for
7453797

.
gma-u.5
for
100817092

.
gma-u.5
for
100781619

.
gma-u.5
for
100777610

.
mtr-u.5
for
11429899

.
mtr-u.5
for
25493727

.
ath-u.5
for
AT5G63120

.
ath-u.5
for
RH20

.
vvi-u.5
for
100260348

.
vvi-u.5
for
100248020

.
sly-u.5
for
101265421

.
sly-u.5
for
ER68

.
osa-u.5
for
9271802

.
osa-u.5
for
9268869

.
zma-u.5
for
542146

.
zma-u.5
for
100274281

.


Ortholog ID: 3273
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT5G63120 RH20 LOC100781619 LOC100777610 LOC101265421 ER68 LOC9268869 LOC9271802 LOC100274281 LOC542146 LOC103837456 LOC103832610 LOC100248020 LOC100260348 LOC7458051 LOC7453797 LOC11429899 LOC25493727 LOC123077397 LOC123080220 LOC123445166 LOC123442875 LOC107897390 LOC107906108 LOC106443553 LOC106415586 CHLRE_01g028200v5 LOC8056154 LOC8084338 LOC102594982 LOC102578396 LOC102609234 LOC102619005 LOC100832027 LOC100824274 LOC107790616 LOC107812893
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein DEA(D/H)-box RNA helicase family protein DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 30 DEAD-box ATP-dependent RNA helicase 20 ethylene-responsive RNA helicase DEAD-box ATP-dependent RNA helicase 20-like DEAD-box ATP-dependent RNA helicase 30-like uncharacterized LOC100274281 DEAD box RNA helicase 1 DEAD-box ATP-dependent RNA helicase 30 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 30 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 30 DEAD-box ATP-dependent RNA helicase 30 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 uncharacterized protein DEAD-box ATP-dependent RNA helicase 30 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 30 DEAD-box ATP-dependent RNA helicase 20 DEAD-box ATP-dependent RNA helicase 20-like DEAD-box ATP-dependent RNA helicase 20
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 4
ath03015 mRNA surveillance pathway 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
vvi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03015 mRNA surveillance pathway 2
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03040 Spliceosome 4
tae00590 Arachidonic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 11
bna03008 Ribosome biogenesis in eukaryotes 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
bna03008 Ribosome biogenesis in eukaryotes 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi00860 Porphyrin metabolism 2
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi01240 Biosynthesis of cofactors 2
sbi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot00970 Aminoacyl-tRNA biosynthesis 2
sot00220 Arginine biosynthesis 2
sot00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta03040 Spliceosome 2
nta03083 Polycomb repressive complex 2
nta03410 Base excision repair 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836432 841958 100781619 100777610 101265421 544216 9268869 9271802 100274281 542146 103837456 103832610 100248020 100260348 7458051 7453797 11429899 25493727 123077397 123080220 123445166 123442875 107897390 107906108 106443553 106415586 5715321 8056154 8084338 102594982 102578396 102609234 102619005 100832027 100824274 107790616 107812893
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