ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18096835	uncharacterized LOC18096835
ppo-r.4	18096835	uncharacterized LOC18096835
ppo-u.5	18097845	uncharacterized LOC18097845
ppo-u.5	7457512	uncharacterized LOC7457512
ppo-u.5	18094759	uncharacterized LOC18094759
gma-u.5	100778731	uncharacterized LOC100778731
gma-u.5	100804013	uncharacterized LOC100804013
gma-u.5	100793613	uncharacterized LOC100793613
mtr-u.5	11416605	sorting nexin-16
mtr-u.5	25491399	uncharacterized LOC25491399
mtr-u.5	25482670	uncharacterized LOC25482670
ath-u.5	AT2G15900	phox domain-containing protein
ath-u.5	AT1G15240	phox (PX) domain-containing protein
bra-r.6	103844333	uncharacterized LOC103844333
bra-r.6	103842913	uncharacterized LOC103842913
bra-r.6	103872315	uncharacterized LOC103872315
vvi-u.5	100243006	uncharacterized LOC100243006
vvi-u.5	100260575	uncharacterized LOC100260575
ghi-r.1	107951910	uncharacterized LOC107951910
ghi-r.1	107897196	uncharacterized LOC107897196
ghi-r.1	107913907	uncharacterized LOC107913907
bna-r.1	106415055	uncharacterized LOC106415055
bna-r.1	106445620	uncharacterized LOC106445620
bna-r.1	106346675	uncharacterized LOC106346675
cit-r.1	102616795	uncharacterized LOC102616795
cit-r.1	102611914	uncharacterized LOC102611914
sly-u.5	101255541	uncharacterized LOC101255541
sly-u.5	101268076	uncharacterized LOC101268076
sly-u.5	101260805	uncharacterized LOC101260805
sot-r.1	102586355	uncharacterized LOC102586355
sot-r.1	102590042	uncharacterized LOC102590042
sot-r.1	102591656	uncharacterized LOC102591656
nta-r.1	107782878	uncharacterized LOC107782878
nta-r.1	107797999	uncharacterized LOC107797999
nta-r.1	107815362	uncharacterized LOC107815362
osa-u.5	4339743	probable GPI-anchored adhesin-like protein PGA55
osa-u.5	4349840	uncharacterized LOC4349840
zma-u.5	100381615	uncharacterized LOC100381615
zma-u.5	100502224	uncharacterized LOC100502224
tae-r.2	123183272	uncharacterized LOC123183272
tae-r.2	123069756	uncharacterized LOC123069756
tae-r.2	123086533	uncharacterized LOC123086533
hvu-r.1	123448013	uncharacterized LOC123448013
hvu-r.1	123451968	uncharacterized LOC123451968
sbi-r.1	8083080	uncharacterized LOC8083080
sbi-r.1	8083817	uncharacterized LOC8083817
bdi-r.1	100835885	uncharacterized LOC100835885
bdi-r.1	100826848	uncharacterized LOC100826848
cre-r.1	CHLRE_02g088450v5	uncharacterized protein

Top 50 coexpressed genes to 18096835 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18096835 (ppo-u.5 coexpression data)

CoexMap"18096835"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0035091 [list] [network] phosphatidylinositol binding

(92 genes)

IEA

Protein

XP_024453313.2 [sequence] [blastp]
XP_024453314.2 [sequence] [blastp]
XP_024453315.2 [sequence] [blastp]
XP_024453316.2 [sequence] [blastp]
XP_024453317.2 [sequence] [blastp]
XP_052307503.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, chlo 1, nucl 1, E.R. 1, pero 1	(predict for XP_024453313.2)
nucl 5, chlo 3, nucl_plas 3	(predict for XP_024453314.2)
nucl 5, chlo 3, nucl_plas 3	(predict for XP_024453315.2)
plas 7, nucl 1, chlo 1, pero 1, cyto_nucl 1, cysk_nucl 1	(predict for XP_024453316.2)
plas 6, nucl 1, mito 1, extr 1, E.R. 1, pero 1, cyto_nucl 1, cysk_nucl 1	(predict for XP_024453317.2)
plas 7, chlo 1, nucl 1, E.R. 1, pero 1	(predict for XP_052307503.1)

Subcellular
localization
TargetP

other 8, mito 4	(predict for XP_024453313.2)
chlo 6, mito 3	(predict for XP_024453314.2)
chlo 6, mito 3	(predict for XP_024453315.2)
other 8, mito 4	(predict for XP_024453316.2)
other 8, mito 4	(predict for XP_024453317.2)
other 8, mito 4	(predict for XP_052307503.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18096835	ppo-r.4 for 18096835	ppo-u.5 for 18097845	ppo-u.5 for 7457512	ppo-u.5 for 18094759	gma-u.5 for 100778731	gma-u.5 for 100804013	gma-u.5 for 100793613	mtr-u.5 for 11416605	mtr-u.5 for 25491399	mtr-u.5 for 25482670	ath-u.5 for AT2G15900	ath-u.5 for AT1G15240	bra-r.6 for 103844333	bra-r.6 for 103842913	bra-r.6 for 103872315	vvi-u.5 for 100243006	vvi-u.5 for 100260575	ghi-r.1 for 107951910	ghi-r.1 for 107897196	ghi-r.1 for 107913907	bna-r.1 for 106415055	bna-r.1 for 106445620	bna-r.1 for 106346675	cit-r.1 for 102616795	cit-r.1 for 102611914	sly-u.5 for 101255541	sly-u.5 for 101268076	sly-u.5 for 101260805	sot-r.1 for 102586355	sot-r.1 for 102590042	sot-r.1 for 102591656	nta-r.1 for 107782878	nta-r.1 for 107797999	nta-r.1 for 107815362	osa-u.5 for 4339743	osa-u.5 for 4349840	zma-u.5 for 100381615	zma-u.5 for 100502224	tae-r.2 for 123183272	tae-r.2 for 123069756	tae-r.2 for 123086533	hvu-r.1 for 123448013	hvu-r.1 for 123451968	sbi-r.1 for 8083080	sbi-r.1 for 8083817	bdi-r.1 for 100835885	bdi-r.1 for 100826848	cre-r.1 for CHLRE_02g088450v5

Ortholog

Ortholog ID: 2011

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC18096835

uncharacterized LOC18097845

uncharacterized LOC18094759

uncharacterized LOC100804013

uncharacterized LOC100793613

uncharacterized LOC100790491

sorting nexin-16

uncharacterized LOC25482670

uncharacterized LOC11445171

phox domain-containing protein

phox (PX) domain-containing protein

uncharacterized LOC103844333

uncharacterized LOC103842913

uncharacterized LOC103872315

uncharacterized LOC100243006

uncharacterized LOC100260575

uncharacterized LOC107951910

uncharacterized LOC107949593

uncharacterized LOC107953416

uncharacterized LOC106445620

uncharacterized LOC106363674

uncharacterized LOC106367059

uncharacterized LOC102616795

uncharacterized LOC102611914

uncharacterized LOC101255541

uncharacterized LOC101268076

uncharacterized LOC101260805

uncharacterized LOC102590042

uncharacterized LOC102591656

uncharacterized LOC107819579

uncharacterized LOC107826583

uncharacterized LOC107766178

probable GPI-anchored adhesin-like protein PGA55

uncharacterized LOC4349840

uncharacterized LOC100381615

uncharacterized LOC100502224

uncharacterized LOC123069756

uncharacterized LOC123091465

uncharacterized LOC123096432

uncharacterized LOC123448013

uncharacterized LOC123451968

uncharacterized LOC8083080

uncharacterized LOC8083817

uncharacterized LOC100835885

uncharacterized LOC100826848

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	3
ppo04144	Endocytosis	3
ppo05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	3
gma00564	Glycerophospholipid metabolism	2
gma00565	Ether lipid metabolism	2
gma04144	Endocytosis	2
gma00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	7
mtr03020	RNA polymerase	2
mtr03010	Ribosome	2
mtr00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04136	Autophagy - other	2
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03018	RNA degradation	3
ghi04814	Motor proteins	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi03018	RNA degradation	3
ghi04814	Motor proteins	2
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	4
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi00350	Tyrosine metabolism	2
ghi00360	Phenylalanine metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta04070	Phosphatidylinositol signaling system	2
nta04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	2
sbi03015	mRNA surveillance pathway	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	2
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi04136	Autophagy - other	2

Expression

Expression pattern

Entrez Gene ID^*

18096835

18097845

18094759

100804013

100793613

100790491

11416605

25482670

11445171

816086

838091

103844333

103842913

103872315

100243006

100260575

107951910

107949593

107953416

106445620

106363674

106367059

102616795

102611914

101255541

101268076

101260805

102590042

102591656

107819579

107826583

107766178

4339743

4349840

100381615

100502224

123069756

123091465

123096432

123448013

123451968

8083080

8083817

100835885

100826848

66052297

The preparation time of this page was 0.4 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	2	3	2	3	3	2	3	3	3	2	2	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18096835 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18096835 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**