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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18096891   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ppo-r.4   18096891   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 gma-u.5   100780029   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 gma-u.5   100785827   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like 
 mtr-u.5   25493594   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 ath-u.5   CLPR4   CLP protease R subunit 4 
 vvi-u.5   100855178   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 sly-u.5   101247052   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 osa-u.5   4325168   ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic 
 zma-u.5   100272400   uncharacterized LOC100272400 

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Top 50 coexpressed genes to 18096891 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18096891 (ppo-u.5 coexpression data)

CoexMap"18096891"


ppoLOC18096891 | Entrez gene ID : 18096891    
Species ppo gma mtr ath vvi sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006515 [list] [network] protein quality control for misfolded or incompletely synthesized proteins  (20 genes)  IEA  
GO CC
GO:0009368 [list] [network] endopeptidase Clp complex  (14 genes)  IEA  
GO MF
GO:0051117 [list] [network] ATPase binding  (20 genes)  IEA  
GO:0004176 [list] [network] ATP-dependent peptidase activity  (40 genes)  IEA  
GO:0004252 [list] [network] serine-type endopeptidase activity  (144 genes)  IEA  
Protein XP_006385563.1 [sequence] [blastp]
XP_052307491.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_006385563.1)
chlo 6,  mito 4  (predict for XP_052307491.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_006385563.1)
chlo 9  (predict for XP_052307491.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18096891
ppo-r.4
for
18096891
gma-u.5
for
100780029
gma-u.5
for
100785827
mtr-u.5
for
25493594
ath-u.5
for
CLPR4
vvi-u.5
for
100855178
sly-u.5
for
101247052
osa-u.5
for
4325168
zma-u.5
for
100272400


Ortholog ID: 7277
Species ppo gma gma mtr ath bra bra vvi ghi ghi bna bna cit cit sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC18096891 LOC100785827 LOC100780029 LOC25493594 CLPR4 LOC103868942 LOC103860891 LOC100855178 LOC107950095 LOC107939884 LOC106440262 LOC106425454 LOC102629735 LOC102627265 LOC101247052 LOC102591717 LOC107790385 LOC107831804 LOC4325168 LOC100272400 LOC123078165 LOC123061092 LOC123443508 LOC8074526 LOC100842227 CHLRE_03g204350v5
Function* ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic CLP protease R subunit 4 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic uncharacterized LOC100272400 ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 5
gma00450 Selenocompound metabolism 4
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 2
ath00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
vvi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00340 Histidine metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 4
bna03060 Protein export 2
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 4
bna00230 Purine metabolism 2
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 3
nta00340 Histidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18096891 100785827 100780029 25493594 827412 103868942 103860891 100855178 107950095 107939884 106440262 106425454 102629735 102627265 101247052 102591717 107790385 107831804 4325168 100272400 123078165 123061092 123443508 8074526 100842227 5718870
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