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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18097858   uncharacterized LOC18097858 
 ppo-r.4   18097858   uncharacterized LOC18097858 
 gma-u.5   100808763   serine/threonine-protein kinase SMG1 
 mtr-u.5   11414460   serine/threonine-protein kinase SMG1 
 vvi-u.5   100260579   uncharacterized LOC100260579 
 sly-u.5   101268042   uncharacterized LOC101268042 
 osa-u.5   4334045   uncharacterized LOC4334045 
 zma-u.5   103643975   serine/threonine-protein kinase SMG1 

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Top 50 coexpressed genes to 18097858 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18097858 (ppo-u.5 coexpression data)

CoexMap"18097858"


ppoLOC18097858 | Entrez gene ID : 18097858    
Species ppo gma mtr vvi sly osa zma bdi hvu bra cit bna ath sbi ghi sot nta cre tae
Paralog 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (21 genes)  IEA  
GO:0016310 [list] [network] phosphorylation  (1535 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0004674 [list] [network] protein serine/threonine kinase activity  (455 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024455122.1 [sequence] [blastp]
XP_024455123.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  plas 2,  chlo 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_024455122.1)
nucl 5,  plas 2,  chlo 1,  E.R._plas 1,  cyto_plas 1  (predict for XP_024455123.1)
Subcellular
localization
TargetP
chlo 3  (predict for XP_024455122.1)
chlo 3  (predict for XP_024455123.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18097858
ppo-r.4
for
18097858
gma-u.5
for
100808763
mtr-u.5
for
11414460
vvi-u.5
for
100260579
sly-u.5
for
101268042
osa-u.5
for
4334045
zma-u.5
for
103643975


Ortholog ID: 11197
Species ppo gma mtr bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae hvu sbi bdi cre
Symbol LOC18097858 LOC100808763 LOC11414460 LOC103844331 LOC100260579 LOC107921970 LOC107925423 LOC106445619 LOC106408590 LOC102618809 LOC101268042 LOC102596311 LOC107800078 LOC107823315 LOC4334045 LOC103643975 LOC123086925 LOC123450226 LOC8060503 LOC104581974 CHLRE_13g572050v5
Function* uncharacterized LOC18097858 serine/threonine-protein kinase SMG1 serine/threonine-protein kinase SMG1 serine/threonine-protein kinase SMG1 uncharacterized LOC100260579 uncharacterized LOC107921970 uncharacterized LOC107925423 serine/threonine-protein kinase SMG1 serine/threonine-protein kinase SMG1 uncharacterized LOC102618809 uncharacterized LOC101268042 serine/threonine-protein kinase SMG1-like uncharacterized LOC107800078 uncharacterized LOC107823315 uncharacterized LOC4334045 serine/threonine-protein kinase SMG1 serine/threonine-protein kinase SMG1 serine/threonine-protein kinase SMG1-like serine/threonine-protein kinase SMG1 serine/threonine-protein kinase SMG1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 3
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 5
bna03082 ATP-dependent chromatin remodeling 3
bna02010 ABC transporters 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna02010 ABC transporters 5
bna04120 Ubiquitin mediated proteolysis 4
bna04146 Peroxisome 3
bna03015 mRNA surveillance pathway 2
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03018 RNA degradation 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04142 Lysosome 2
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18097858 100808763 11414460 103844331 100260579 107921970 107925423 106445619 106408590 102618809 101268042 102596311 107800078 107823315 4334045 103643975 123086925 123450226 8060503 104581974 5719158
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