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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7483618   GDP-L-galactose phosphorylase 2 
 ppo-u.5   7470803   GDP-L-galactose phosphorylase 1 
 gma-u.5   100806541   GDP-L-galactose phosphorylase 1-like 
 gma-u.5   100800738   GDP-L-galactose phosphorylase 1 
 gma-u.5   100785588   GDP-L-galactose phosphorylase 1 
 mtr-u.5   11423375   GDP-L-galactose phosphorylase 1 
 mtr-u.5   25488979   GDP-L-galactose phosphorylase 1 
 ath-u.5   VTC2   GDP-L-galactose phosphorylase 1 
 ath-u.5   VTC5   GDP-L-galactose phosphorylase VITAMIN C DEFECTIVE 5 (VTC5) 
 vvi-u.5   100253859   GDP-L-galactose phosphorylase 2 
 vvi-u.5   100262099   GDP-L-galactose phosphorylase 1 
 sly-u.5   GGP1   GDP-L-galactose phosphorylase 1 
 sly-u.5   GGP2   GDP-L-galactose phosphorylase 
 osa-u.5   4351698   GDP-L-galactose phosphorylase 2 
 zma-u.5   100283852   VTC2 

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Top 50 coexpressed genes to 7483618 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7483618 (ppo-u.5 coexpression data)

CoexMap"18099376"


ppoLOC18099376 | Entrez gene ID : 18099376    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 3 2 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00053 [list] [network] Ascorbate and aldarate metabolism (69 genes)
pop01240 [list] [network] Biosynthesis of cofactors (298 genes)
GO BP
GO:0006006 [list] [network] glucose metabolic process  (51 genes)  IEA  
GO CC
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0080048 [list] [network] GDP-D-glucose phosphorylase activity  (3 genes)  IEA  
Protein XP_006383317.3 [sequence] [blastp]
XP_052304563.1 [sequence] [blastp]
XP_052304564.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 1,  plas 1,  nucl 1,  mito 1,  extr 1,  golg 1,  cysk_plas 1,  E.R._plas 1  (predict for XP_006383317.3)
cyto 4,  chlo 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_052304563.1)
cyto 6,  nucl 2,  vacu 1,  nucl_plas 1,  E.R._vacu 1  (predict for XP_052304564.1)
Subcellular
localization
TargetP
other 8  (predict for XP_006383317.3)
scret 6,  other 3  (predict for XP_052304563.1)
other 7,  mito 6  (predict for XP_052304564.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7483618

.
ppo-u.5
for
7470803

.
gma-u.5
for
100806541

.
gma-u.5
for
100800738

.
gma-u.5
for
100785588

.
mtr-u.5
for
11423375

.
mtr-u.5
for
25488979

.
ath-u.5
for
VTC2

.
ath-u.5
for
VTC5

.
vvi-u.5
for
100253859

.
vvi-u.5
for
100262099

.
sly-u.5
for
GGP1

.
sly-u.5
for
GGP2

.
osa-u.5
for
4351698

.
zma-u.5
for
100283852

.


Ortholog ID: 3252
Species ath ath gma gma sly sly osa zma bra bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol VTC5 VTC2 LOC100806541 LOC100785588 GGP2 GGP1 LOC4351698 LOC100283852 VTC2 LOC103851903 LOC100253859 LOC100262099 LOC7470803 LOC25488979 LOC11423375 LOC123096339 LOC123110933 LOC123447890 LOC123453136 LOC107921993 LOC107932761 LOC106361354 LOC106418494 CHLRE_13g588150v5 LOC8084736 LOC102593176 LOC102596542 LOC102631172 LOC102617187 LOC100843203 LOC100842186 LOC107774485 LOC107759279
Function* GDP-L-galactose phosphorylase VITAMIN C DEFECTIVE 5 (VTC5) GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 1-like GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 2 VTC2 GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 2-like GDP-L-galactose phosphorylase 2-like GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 1 GDP-L-galactose phosphorylase 2-like uncharacterized protein GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 1-like GDP-L-galactose phosphorylase 1-like GDP-L-galactose phosphorylase 1-like GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 2 GDP-L-galactose phosphorylase 2-like GDP-L-galactose phosphorylase 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00966 Glucosinolate biosynthesis 7
ath00380 Tryptophan metabolism 6
ath01210 2-Oxocarboxylic acid metabolism 6
ath00920 Sulfur metabolism 3
ath00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 3
gma00053 Ascorbate and aldarate metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly04712 Circadian rhythm - plant 2
sly00053 Ascorbate and aldarate metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 3
zma00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00053 Ascorbate and aldarate metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 3
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 5
ppo01200 Carbon metabolism 4
ppo00053 Ascorbate and aldarate metabolism 4
ppo00030 Pentose phosphate pathway 3
ppo00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 3
mtr00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
mtr01230 Biosynthesis of amino acids 2
mtr00053 Ascorbate and aldarate metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04081 Hormone signaling 2
tae00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04712 Circadian rhythm - plant 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00053 Ascorbate and aldarate metabolism 6
ghi01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00053 Ascorbate and aldarate metabolism 6
ghi01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00053 Ascorbate and aldarate metabolism 4
bna01240 Biosynthesis of cofactors 4
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00260 Glycine, serine and threonine metabolism 3
bna01200 Carbon metabolism 3
bna01230 Biosynthesis of amino acids 3
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
sbi04712 Circadian rhythm - plant 2
sbi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00053 Ascorbate and aldarate metabolism 2
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01240 Biosynthesis of cofactors 2
cit01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 3
bdi04712 Circadian rhythm - plant 3
bdi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 4
bdi00520 Amino sugar and nucleotide sugar metabolism 2
bdi01250 Biosynthesis of nucleotide sugars 2
bdi00562 Inositol phosphate metabolism 2
bdi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 4
nta00053 Ascorbate and aldarate metabolism 2
nta00600 Sphingolipid metabolism 2
nta04142 Lysosome 2
nta00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 4
nta00053 Ascorbate and aldarate metabolism 2
nta00600 Sphingolipid metabolism 2
nta04142 Lysosome 2
nta00770 Pantothenate and CoA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835603 828792 100806541 100785588 101255942 101055572 4351698 100283852 103866673 103851903 100253859 100262099 7470803 25488979 11423375 123096339 123110933 123447890 123453136 107921993 107932761 106361354 106418494 5719447 8084736 102593176 102596542 102631172 102617187 100843203 100842186 107774485 107759279
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