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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18100110   carotene epsilon-monooxygenase, chloroplastic 
 ppo-r.4   18100110   carotene epsilon-monooxygenase, chloroplastic 
 gma-u.5   100803324   carotene epsilon-monooxygenase, chloroplastic 
 gma-u.5   100797221   carotene epsilon-monooxygenase, chloroplastic 
 mtr-u.5   11429551   carotene epsilon-monooxygenase, chloroplastic 
 ath-u.5   LUT1   Cytochrome P450 superfamily protein 
 vvi-u.5   100243621   carotene epsilon-monooxygenase, chloroplastic 
 sly-u.5   CYP97C11   cytochrome P450-type monooxygenase 97C11 
 osa-u.5   4349290   carotene epsilon-monooxygenase, chloroplastic 
 zma-u.5   103637620   carotene epsilon-monooxygenase, chloroplastic 

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Top 50 coexpressed genes to 18100110 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18100110 (ppo-u.5 coexpression data)

CoexMap"18100110"


ppoLOC18100110 | Entrez gene ID : 18100110    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00906 [list] [network] Carotenoid biosynthesis (54 genes)
GO BP
GO:0016117 [list] [network] carotenoid biosynthetic process  (23 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0005506 [list] [network] iron ion binding  (388 genes)  IEA  
GO:0020037 [list] [network] heme binding  (439 genes)  IEA  
Protein XP_024458530.2 [sequence] [blastp]
XP_024458531.2 [sequence] [blastp]
XP_052310266.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 4,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for XP_024458530.2)
chlo 7,  chlo_mito 4,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for XP_024458531.2)
chlo 9,  chlo_mito 6  (predict for XP_052310266.1)
Subcellular
localization
TargetP
chlo 4  (predict for XP_024458530.2)
chlo 4  (predict for XP_024458531.2)
chlo 4  (predict for XP_052310266.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18100110

.
ppo-r.4
for
18100110

.
gma-u.5
for
100803324

.
gma-u.5
for
100797221

.
mtr-u.5
for
11429551

.
ath-u.5
for
LUT1

.
vvi-u.5
for
100243621

.
sly-u.5
for
CYP97C11

.
osa-u.5
for
4349290

.
zma-u.5
for
103637620

.


Ortholog ID: 10148
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol LUT1 LOC100797221 LOC100803324 CYP97C11 LOC4349290 LOC103637620 LOC103850280 LOC100243621 LOC18100110 LOC11429551 LOC123051536 LOC123181586 LOC123437999 LOC121223568 LOC121209533 LOC106352760 LOC106452442 CHLRE_08g373100v5 LOC8058776 LOC102591274 LOC102625870 LOC100835344 LOC107797056 LOC107761917
Function* Cytochrome P450 superfamily protein carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic cytochrome P450-type monooxygenase 97C11 carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic-like uncharacterized protein carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic carotene epsilon-monooxygenase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00906 Carotenoid biosynthesis 2
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 4
vvi01200 Carbon metabolism 4
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi00260 Glycine, serine and threonine metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00906 Carotenoid biosynthesis 3
tae03060 Protein export 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 3
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
hvu00520 Amino sugar and nucleotide sugar metabolism 3
hvu01250 Biosynthesis of nucleotide sugars 3
hvu00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 4
bna00970 Aminoacyl-tRNA biosynthesis 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 2
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824479 100797221 100803324 100322877 4349290 103637620 103850280 100243621 18100110 11429551 123051536 123181586 123437999 121223568 121209533 106352760 106452442 66054412 8058776 102591274 102625870 100835344 107797056 107761917
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