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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18100124   uncharacterized LOC18100124 
 ppo-r.4   18100124   uncharacterized LOC18100124 
 ppo-u.5   18106260   uncharacterized LOC18106260 
 gma-u.5   100791333   splicing factor 3A subunit 2 
 mtr-u.5   25500193   splicing factor 3A subunit 2 
 ath-u.5   AT2G32600   hydroxyproline-rich glycoprotein family protein 
 vvi-u.5   100245136   uncharacterized LOC100245136 
 sly-u.5   101255621   uncharacterized LOC101255621 
 osa-u.5   4332334   uncharacterized LOC4332334 
 zma-u.5   100273898   male sterile45 
 zma-u.5   100272589   Splicing factor 3A subunit 2 

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Top 50 coexpressed genes to 18100124 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18100124 (ppo-u.5 coexpression data)

CoexMap"18100124"


ppoLOC18100124 | Entrez gene ID : 18100124    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0000245 [list] [network] spliceosomal complex assembly  (22 genes)  IEA  
GO CC
GO:0071004 [list] [network] U2-type prespliceosome  (30 genes)  IEA  
GO:0005686 [list] [network] U2 snRNP  (34 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (72 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4002 genes)  IEA  
Protein XP_006381374.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  cyto 1  (predict for XP_006381374.1)
Subcellular
localization
TargetP
other 7  (predict for XP_006381374.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18100124

.
ppo-r.4
for
18100124

.
ppo-u.5
for
18106260

.
gma-u.5
for
100791333

.
mtr-u.5
for
25500193

.
ath-u.5
for
AT2G32600

.
vvi-u.5
for
100245136

.
sly-u.5
for
101255621

.
osa-u.5
for
4332334

.
zma-u.5
for
100273898

.
zma-u.5
for
100272589

.


Ortholog ID: 9412
Species ath gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT2G32600 LOC100791333 LOC101255621 LOC4332334 LOC100272589 LOC100273898 LOC103867658 LOC100245136 LOC18106260 LOC18100124 LOC25500193 LOC123085362 LOC123097981 LOC123449088 LOC107908741 LOC107907325 LOC106352941 LOC106451325 CHLRE_06g252700v5 LOC8054294 LOC102584531 LOC102607630 LOC100823915 LOC107811387 LOC107822419
Function* hydroxyproline-rich glycoprotein family protein splicing factor 3A subunit 2 uncharacterized LOC101255621 uncharacterized LOC4332334 Splicing factor 3A subunit 2 male sterile45 splicing factor 3A subunit 2 uncharacterized LOC100245136 uncharacterized LOC18106260 uncharacterized LOC18100124 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 splicing factor 3A subunit 2 uncharacterized protein splicing factor 3A subunit 2 splicing factor 3A subunit 2 uncharacterized LOC102607630 splicing factor 3A subunit 2 uncharacterized LOC107811387 uncharacterized LOC107822419
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 9
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 10
osa03013 Nucleocytoplasmic transport 4
osa03015 mRNA surveillance pathway 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 9
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra00970 Aminoacyl-tRNA biosynthesis 2
bra03040 Spliceosome 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04148 Efferocytosis 4
tae00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 10
bna03060 Protein export 2
bna00010 Glycolysis / Gluconeogenesis 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 9
bna03060 Protein export 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot00190 Oxidative phosphorylation 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit03040 Spliceosome 3
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817820 100791333 101255621 4332334 100272589 100273898 103867658 100245136 18106260 18100124 25500193 123085362 123097981 123449088 107908741 107907325 106352941 106451325 5722168 8054294 102584531 102607630 100823915 107811387 107822419
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