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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18100243   DNA topoisomerase 6 subunit A 
 ppo-r.4   18100243   DNA topoisomerase 6 subunit A 
 gma-u.5   100782577   DNA topoisomerase 6 subunit A 
 gma-u.5   100778158   DNA topoisomerase 6 subunit A 
 mtr-u.5   25484058   DNA topoisomerase 6 subunit A 
 ath-u.5   RHL2   Spo11/DNA topoisomerase VI, subunit A protein 
 vvi-u.5   100260201   DNA topoisomerase 6 subunit A 
 sly-u.5   101260755   DNA topoisomerase 6 subunit A 
 osa-u.5   SPO11-3   Topoisomerase 6 subunit A3 
 zma-u.5   100273699   uncharacterized LOC100273699 

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Top 50 coexpressed genes to 18100243 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18100243 (ppo-u.5 coexpression data)

CoexMap"18100243"


ppoLOC18100243 | Entrez gene ID : 18100243    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000706 [list] [network] meiotic DNA double-strand break processing  (3 genes)  IEA  
GO:0042138 [list] [network] meiotic DNA double-strand break formation  (10 genes)  IEA  
GO:0006265 [list] [network] DNA topological change  (13 genes)  IEA  
GO:0007131 [list] [network] reciprocal meiotic recombination  (37 genes)  IEA  
GO CC
GO:0000228 [list] [network] nuclear chromosome  (92 genes)  IEA  
GO MF
GO:0003918 [list] [network] DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity  (10 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_006381506.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 2,  cysk_nucl 2,  cyto_mito 1  (predict for XP_006381506.1)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_006381506.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18100243

.
ppo-r.4
for
18100243

.
gma-u.5
for
100782577

.
gma-u.5
for
100778158

.
mtr-u.5
for
25484058

.
ath-u.5
for
RHL2

.
vvi-u.5
for
100260201

.
sly-u.5
for
101260755

.
osa-u.5
for
SPO11-3

.
zma-u.5
for
100273699

.


Ortholog ID: 10298
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi nta nta
Symbol RHL2 LOC100778158 LOC100782577 LOC101260755 SPO11-3 LOC100273699 LOC103847420 LOC100260201 LOC18100243 LOC25484058 LOC123092505 LOC123085530 LOC123448950 LOC107898500 LOC106450521 LOC125579114 CHLRE_02g084800v5 LOC8084884 LOC102606419 LOC102617495 LOC100839132 LOC107786355 LOC107791525
Function* Spo11/DNA topoisomerase VI, subunit A protein DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A Topoisomerase 6 subunit A3 uncharacterized LOC100273699 DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A3 DNA topoisomerase 6 subunit A3 DNA topoisomerase 6 subunit A3 DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A-like uncharacterized protein DNA topoisomerase 6 subunit A3 DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A DNA topoisomerase 6 subunit A3 DNA topoisomerase 6 subunit A-like DNA topoisomerase 6 subunit A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 4
ath03030 DNA replication 3
ath03410 Base excision repair 3
ath03430 Mismatch repair 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi00260 Glycine, serine and threonine metabolism 3
vvi01230 Biosynthesis of amino acids 3
vvi00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr03040 Spliceosome 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae00620 Pyruvate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04145 Phagosome 8
bna04517 IgSF CAM signaling 8
bna04814 Motor proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04145 Phagosome 6
bna04517 IgSF CAM signaling 6
bna04814 Motor proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit01210 2-Oxocarboxylic acid metabolism 3
cit00270 Cysteine and methionine metabolism 3
cit03010 Ribosome 3
cit00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00261 Monobactam biosynthesis 2
nta00300 Lysine biosynthesis 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831314 100778158 100782577 101260755 4332468 100273699 103847420 100260201 18100243 25484058 123092505 123085530 123448950 107898500 106450521 125579114 5727367 8084884 102606419 102617495 100839132 107786355 107791525
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