ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18101075	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ppo-r.4	18101075	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ppo-u.5	112327902	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
ppo-u.5	18102278	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
ppo-u.5	7462973	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
gma-u.5	100814637	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
gma-u.5	DXS1	1-deoxy-D-xylulose 5-phosphate synthase 1
gma-u.5	100776569	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-u.5	11438335	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-u.5	11432476	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
mtr-u.5	11405342	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
ath-u.5	DXPS1	1-deoxy-D-xylulose 5-phosphate synthase 1
ath-u.5	CLA1	Deoxyxylulose-5-phosphate synthase
ath-u.5	DXPS3	1-deoxy-D-xylulose 5-phosphate synthase 3
vvi-u.5	100268079	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
vvi-u.5	100249323	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
sly-u.5	dxs2	1-deoxy-D-xylulose 5-phosphate synthase 2
sly-u.5	101260957	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
sly-u.5	DXS	1-D-deoxyxylulose 5-phosphate synthase
osa-u.5	4340090	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
osa-u.5	4342614	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
osa-u.5	4338768	1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like
zma-u.5	606430	deoxy xylulose synthase 2
zma-u.5	606484	deoxy xylulose synthase 1
zma-u.5	100384006	uncharacterized LOC100384006

Top 50 coexpressed genes to 18101075 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18101075 (ppo-u.5 coexpression data)

CoexMap"18101075"

[Cytoscape]

Annotation

functional annotation

KEGG

pop00730 [list] [network] Thiamine metabolism (31 genes)

pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)

GO BP

GO:0016114 [list] [network] terpenoid biosynthetic process

(102 genes)

IEA

GO CC

GO MF

GO:0008661 [list] [network] 1-deoxy-D-xylulose-5-phosphate synthase activity

(6 genes)

IEA

Protein

XP_006380580.3 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo 4

(predict for XP_006380580.3)

Subcellular
localization
TargetP

chlo 8, scret 3

(predict for XP_006380580.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18101075 .	ppo-r.4 for 18101075 .	ppo-u.5 for 112327902 .	ppo-u.5 for 18102278 .	ppo-u.5 for 7462973 .	gma-u.5 for 100814637 .	gma-u.5 for DXS1 .	gma-u.5 for 100776569 .	mtr-u.5 for 11438335 .	mtr-u.5 for 11432476 .	mtr-u.5 for 11405342 .	ath-u.5 for DXPS1 .	ath-u.5 for CLA1 .	ath-u.5 for DXPS3 .	vvi-u.5 for 100268079 .	vvi-u.5 for 100249323 .	sly-u.5 for dxs2 .	sly-u.5 for 101260957 .	sly-u.5 for DXS .	osa-u.5 for 4340090 .	osa-u.5 for 4342614 .	osa-u.5 for 4338768 .	zma-u.5 for 606430 .	zma-u.5 for 606484 .	zma-u.5 for 100384006 .

Ortholog

Ortholog ID: 1108

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

DXPS3

CLA1

DXS

Function^*

1-deoxy-D-xylulose 5-phosphate synthase 3

Deoxyxylulose-5-phosphate synthase

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-D-deoxyxylulose 5-phosphate synthase

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic-like

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

uncharacterized LOC100384006

deoxy xylulose synthase 1

1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

uncharacterized protein

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

1-deoxy-D-xylulose-5-phosphate synthase 1, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00860	Porphyrin metabolism	5
ath00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	5
gma00906	Carotenoid biosynthesis	4
gma00900	Terpenoid backbone biosynthesis	4
gma00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	4
gma00730	Thiamine metabolism	3
gma00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00860	Porphyrin metabolism	9
sly01240	Biosynthesis of cofactors	5
sly00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00860	Porphyrin metabolism	5
osa00906	Carotenoid biosynthesis	2
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00904	Diterpenoid biosynthesis	8
osa00900	Terpenoid backbone biosynthesis	4
osa01040	Biosynthesis of unsaturated fatty acids	2
osa01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	3
zma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	3
bra00730	Thiamine metabolism	2
bra00900	Terpenoid backbone biosynthesis	2
bra00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00730	Thiamine metabolism	2
bra00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00860	Porphyrin metabolism	9
tae00196	Photosynthesis - antenna proteins	5
tae00730	Thiamine metabolism	3
tae00900	Terpenoid backbone biosynthesis	3
tae00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00730	Thiamine metabolism	5
tae00900	Terpenoid backbone biosynthesis	5
tae00904	Diterpenoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04075	Plant hormone signal transduction	6
hvu00592	alpha-Linolenic acid metabolism	2
hvu00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00904	Diterpenoid biosynthesis	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	7
ghi00906	Carotenoid biosynthesis	2
ghi00730	Thiamine metabolism	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	4
ghi00730	Thiamine metabolism	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00730	Thiamine metabolism	2
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00730	Thiamine metabolism	6
bna00900	Terpenoid backbone biosynthesis	6
bna00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00860	Porphyrin metabolism	9
cre01240	Biosynthesis of cofactors	6
cre00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00730	Thiamine metabolism	3
sbi00900	Terpenoid backbone biosynthesis	3
sbi04712	Circadian rhythm - plant	3
sbi00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00900	Terpenoid backbone biosynthesis	5
sot00909	Sesquiterpenoid and triterpenoid biosynthesis	3
sot00280	Valine, leucine and isoleucine degradation	2
sot00650	Butanoate metabolism	2
sot00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04146	Peroxisome	2
cit01230	Biosynthesis of amino acids	2
cit02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	7
cit00196	Photosynthesis - antenna proteins	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	6
bdi00900	Terpenoid backbone biosynthesis	3
bdi00196	Photosynthesis - antenna proteins	2
bdi00730	Thiamine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	3
bdi00900	Terpenoid backbone biosynthesis	3
bdi00190	Oxidative phosphorylation	3
bdi04075	Plant hormone signal transduction	3
bdi00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00196	Photosynthesis - antenna proteins	8
nta00860	Porphyrin metabolism	4
nta00900	Terpenoid backbone biosynthesis	4
nta00730	Thiamine metabolism	2
nta00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	10
nta00900	Terpenoid backbone biosynthesis	4
nta00730	Thiamine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

831009

827230

100789279

100814637

101260957

544220

4338768

4342614

100384006

606484

103860788

103870527

100247834

100268079

18102278

7469091

11432476

11405342

123055375

123175967

123418768

123431353

107897631

107942694

106391316

106400791

5727627

8070720

8085126

102600007

102598525

102618368

102620503

100839607

100821434

107790348

107818796

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	5	3	3	3	2	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18101075 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18101075 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**