ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	18101141	suppressor of RPS4-RLD 1
ppo-r.4	18101141	suppressor of RPS4-RLD 1
gma-u.5	100815327	suppressor of RPS4-RLD 1
gma-u.5	100803316	suppressor of RPS4-RLD 1
gma-u.5	100808879	suppressor of RPS4-RLD 1
mtr-u.5	11411921	suppressor of RPS4-RLD 1
ath-u.5	SRFR1	Tetratricopeptide repeat (TPR)-like superfamily protein
vvi-u.5	100264606	suppressor of RPS4-RLD 1
sly-u.5	101252448	suppressor of RPS4-RLD 1
osa-u.5	4342244	suppressor of RPS4-RLD 1
zma-u.5	103648284	suppressor of RPS4-RLD 1

functional annotation

KEGG

GO BP

GO:0045892 [list] [network] negative regulation of DNA-templated transcription

(78 genes)

IEA

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4916 genes)

IEA

Protein

XP_024460946.2 [sequence] [blastp]
XP_024460947.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 2, E.R. 1, golg 1, chlo 1, mito 1, chlo_mito 1, golg_plas 1, E.R._vacu 1, E.R._plas 1	(predict for XP_024460946.2)
nucl 4, cyto 1, E.R. 1, cyto_E.R. 1, chlo 1, mito 1, pero 1, golg 1, chlo_mito 1, E.R._vacu 1, E.R._plas 1, cyto_plas 1	(predict for XP_024460947.2)

Subcellular
localization
TargetP

chlo 4, other 4	(predict for XP_024460946.2)
chlo 4, other 4	(predict for XP_024460947.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18101141 .	ppo-r.4 for 18101141 .	gma-u.5 for 100815327 .	gma-u.5 for 100803316 .	gma-u.5 for 100808879 .	mtr-u.5 for 11411921 .	ath-u.5 for SRFR1 .	vvi-u.5 for 100264606 .	sly-u.5 for 101252448 .	osa-u.5 for 4342244 .	zma-u.5 for 103648284 .

Ortholog ID: 9627

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

SRFR1

Function^*

Tetratricopeptide repeat (TPR)-like superfamily protein

suppressor of RPS4-RLD 1

suppressor of RPS4-RLD 1-like

suppressor of RPS4-RLD 1

uncharacterized protein

suppressor of RPS4-RLD 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma04148	Efferocytosis	3
gma00562	Inositol phosphate metabolism	3
gma04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03018	RNA degradation	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03083	Polycomb repressive complex	2
sly03250	Viral life cycle - HIV-1	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	2
osa00480	Glutathione metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03083	Polycomb repressive complex	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr04120	Ubiquitin mediated proteolysis	2
mtr03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi04141	Protein processing in endoplasmic reticulum	3
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	5
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi04141	Protein processing in endoplasmic reticulum	3
ghi02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	8
cre04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2
bdi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	2

Expression

Expression pattern

Entrez Gene ID^*

829901

100808879

100815327

101252448

4342244

103648284

103859664

100264606

18101141

11411921

123052931

123188870

123426339

121209914

107900153

106440740

106426864

5715211

110432820

102598556

102617524

100841566

107800615

107791960

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 18101141 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18101141 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	hvu	sot	tae	nta	bra	cit	ghi	bna	bdi	sbi	cre
Paralog	2	3	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18101141 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18101141 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**