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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18102525   alpha-amylase 3, chloroplastic 
 ppo-r.4   18102525   alpha-amylase 3, chloroplastic 
 gma-u.5   100788193   alpha-amylase 3, chloroplastic 
 gma-u.5   100810333   alpha-amylase 3, chloroplastic 
 mtr-u.5   25502785   alpha-amylase 3, chloroplastic 
 ath-u.5   AMY3   alpha-amylase-like 3 
 vvi-u.5   100267346   alpha-amylase 3, chloroplastic 
 sly-u.5   101257661   alpha-amylase 3, chloroplastic 
 osa-u.5   4325575   alpha-amylase 3, chloroplastic 
 zma-u.5   103651265   alpha-amylase 3, chloroplastic 

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Top 50 coexpressed genes to 18102525 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18102525 (ppo-u.5 coexpression data)

CoexMap"18102525"


ppoLOC18102525 | Entrez gene ID : 18102525    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00500 [list] [network] Starch and sucrose metabolism (188 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (863 genes)  IEA  
GO CC
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (5 genes)  IEA  
GO:0005509 [list] [network] calcium ion binding  (301 genes)  IEA  
Protein XP_006378407.2 [sequence] [blastp]
XP_024466049.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 2,  chlo 1,  cyto_pero 1  (predict for XP_006378407.2)
nucl 5,  cyto 2,  chlo 1,  cyto_pero 1  (predict for XP_024466049.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_006378407.2)
chlo 7  (predict for XP_024466049.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18102525

.
ppo-r.4
for
18102525

.
gma-u.5
for
100788193

.
gma-u.5
for
100810333

.
mtr-u.5
for
25502785

.
ath-u.5
for
AMY3

.
vvi-u.5
for
100267346

.
sly-u.5
for
101257661

.
osa-u.5
for
4325575

.
zma-u.5
for
103651265

.


Ortholog ID: 9873
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AMY3 LOC100810333 LOC100788193 LOC101257661 LOC4325575 LOC103651265 LOC103831524 LOC100267346 LOC18102525 LOC25502785 LOC123078800 LOC123070353 LOC123444271 LOC107910680 LOC107887239 LOC106405641 LOC106432554 LOC8069792 LOC102599630 LOC102577968 LOC100821502 LOC107788587 LOC107780165
Function* alpha-amylase-like 3 alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic alpha-amylase 3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
gma03083 Polycomb repressive complex 2
gma03250 Viral life cycle - HIV-1 2
gma03440 Homologous recombination 2
gma03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 3
gma01240 Biosynthesis of cofactors 3
gma00500 Starch and sucrose metabolism 3
gma04075 Plant hormone signal transduction 3
gma00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00310 Lysine degradation 2
sly00500 Starch and sucrose metabolism 2
sly00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 3
vvi01240 Biosynthesis of cofactors 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 6
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 5
mtr00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 9
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00591 Linoleic acid metabolism 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 4
ghi00591 Linoleic acid metabolism 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00350 Tyrosine metabolism 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 8
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00350 Tyrosine metabolism 2
bna00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 3
sbi01200 Carbon metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi03050 Proteasome 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04142 Lysosome 3
sot00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00260 Glycine, serine and threonine metabolism 3
bdi00261 Monobactam biosynthesis 3
bdi00270 Cysteine and methionine metabolism 3
bdi00300 Lysine biosynthesis 3
bdi01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 6
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843319 100810333 100788193 101257661 4325575 103651265 103831524 100267346 18102525 25502785 123078800 123070353 123444271 107910680 107887239 106405641 106432554 8069792 102599630 102577968 100821502 107788587 107780165
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