ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18102627	squamosa promoter-binding-like protein 1
ppo-r.4	18102627	squamosa promoter-binding-like protein 1
ppo-u.5	7481436	squamosa promoter-binding-like protein 1
ppo-u.5	7471075	squamosa promoter-binding-like protein 1
ppo-u.5	7455396	squamosa promoter-binding-like protein 1
gma-u.5	100814273	squamosa promoter-binding-like protein 1
gma-u.5	100809806	squamosa promoter-binding-like protein 1
gma-u.5	100792774	squamosa promoter-binding-like protein 12
mtr-u.5	25486629	squamosa promoter-binding-like protein 1
mtr-u.5	11431578	squamosa promoter-binding-like protein 1
mtr-u.5	11412439	squamosa promoter-binding-like protein 1
ath-u.5	SPL1	squamosa promoter binding protein-like 1
ath-u.5	SPL12	squamosa promoter-binding protein-like 12
bra-r.6	103849484	squamosa promoter-binding-like protein 1
vvi-u.5	100258912	squamosa promoter-binding-like protein 1
vvi-u.5	100252756	squamosa promoter-binding-like protein 1
ghi-r.1	107922748	squamosa promoter-binding-like protein 1
ghi-r.1	107951537	squamosa promoter-binding-like protein 1
ghi-r.1	121220213	squamosa promoter-binding-like protein 1
bna-r.1	106450451	squamosa promoter-binding-like protein 1
bna-r.1	106408356	squamosa promoter-binding-like protein 1
cit-r.1	102623311	squamosa promoter-binding-like protein 1
cit-r.1	102617236	squamosa promoter-binding-like protein 1
sly-u.5	101267894	squamosa promoter-binding-like protein 1
sly-u.5	101260569	squamosa promoter-binding-like protein 1
sot-r.1	102587921	squamosa promoter-binding-like protein 1
sot-r.1	102603758	squamosa promoter-binding-like protein 1
nta-r.1	107789594	squamosa promoter-binding-like protein 1
nta-r.1	107759008	squamosa promoter-binding-like protein 1
nta-r.1	107763047	squamosa promoter-binding-like protein 1
osa-u.5	4334685	squamosa promoter-binding-like protein 6
zma-u.5	100191441	squamosa promoter-binding-like protein 6
zma-u.5	sbp17	SBP-transcription factor 17
tae-r.2	123087786	squamosa promoter-binding-like protein 6
tae-r.2	123114144	squamosa promoter-binding-like protein 6
tae-r.2	123123633	squamosa promoter-binding-like protein 6
hvu-r.1	123394913	squamosa promoter-binding-like protein 6
sbi-r.1	8079685	squamosa promoter-binding-like protein 6
bdi-r.1	100835193	squamosa promoter-binding-like protein 6

Top 50 coexpressed genes to 18102627 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18102627 (ppo-u.5 coexpression data)

CoexMap"18102627"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding	(2205 genes)	IEA
GO:0005515 [list] [network] protein binding	(4916 genes)	IEA

Protein

XP_006378563.3 [sequence] [blastp]
XP_006378564.3 [sequence] [blastp]
XP_024465513.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, plas 1, cyto_E.R. 1	(predict for XP_006378563.3)
nucl 5, cyto 2, plas 1, cyto_E.R. 1	(predict for XP_006378564.3)
nucl 5, cyto 1, vacu 1, chlo 1, plas 1, golg 1, golg_plas 1, E.R._vacu 1, cyto_pero 1, cyto_E.R. 1	(predict for XP_024465513.2)

Subcellular
localization
TargetP

other 7	(predict for XP_006378563.3)
other 7	(predict for XP_006378564.3)
other 5, mito 4	(predict for XP_024465513.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18102627	ppo-r.4 for 18102627	ppo-u.5 for 7481436	ppo-u.5 for 7471075	ppo-u.5 for 7455396	gma-u.5 for 100814273	gma-u.5 for 100809806	gma-u.5 for 100792774	mtr-u.5 for 25486629	mtr-u.5 for 11431578	mtr-u.5 for 11412439	ath-u.5 for SPL1	ath-u.5 for SPL12	bra-r.6 for 103849484	vvi-u.5 for 100258912	vvi-u.5 for 100252756	ghi-r.1 for 107922748	ghi-r.1 for 107951537	ghi-r.1 for 121220213	bna-r.1 for 106450451	bna-r.1 for 106408356	cit-r.1 for 102623311	cit-r.1 for 102617236	sly-u.5 for 101267894	sly-u.5 for 101260569	sot-r.1 for 102587921	sot-r.1 for 102603758	nta-r.1 for 107789594	nta-r.1 for 107759008	nta-r.1 for 107763047	osa-u.5 for 4334685	zma-u.5 for 100191441	zma-u.5 for sbp17	tae-r.2 for 123087786	tae-r.2 for 123114144	tae-r.2 for 123123633	hvu-r.1 for 123394913	sbi-r.1 for 8079685	bdi-r.1 for 100835193

Ortholog

Ortholog ID: 3567

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

SPL1

SPL12

sbp17

Function^*

squamosa promoter-binding-like protein 1

squamosa promoter binding protein-like 1

squamosa promoter-binding protein-like 12

squamosa promoter-binding-like protein 1

squamosa promoter-binding-like protein 6

SBP-transcription factor 17

squamosa promoter-binding-like protein 6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	3
ppo04075	Plant hormone signal transduction	3
ppo03082	ATP-dependent chromatin remodeling	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2
gma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	3
mtr02010	ABC transporters	2
mtr04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	3
ath04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	3
vvi04075	Plant hormone signal transduction	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2
bna03020	RNA polymerase	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	2
bna04070	Phosphatidylinositol signaling system	2
bna04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit03015	mRNA surveillance pathway	2
cit03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	2
sly04144	Endocytosis	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	2
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	3
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03083	Polycomb repressive complex	3
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2
sbi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

18102627

7481436

7455396

100809806

100780152

100776125

25486629

11431578

11412439

819321

825173

103849484

100258912

100252756

107922748

107912253

107916844

106450451

106408356

102623311

102617236

101267894

101260569

102587921

102603758

107789594

107763047

107796274

4334685

100191441

100272505

123087786

123114144

123123633

123394913

8079685

100835193

The preparation time of this page was 0.4 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	2	1	2	3	2	2	2	2	3	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18102627 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18102627 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**