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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18094602   E3 ubiquitin ligase PQT3-like 
 ppo-u.5   7471635   E3 ubiquitin ligase PQT3-like 
 gma-u.5   100808703   E3 ubiquitin ligase PQT3-like 
 gma-u.5   100798536   E3 ubiquitin ligase PQT3-like 
 mtr-u.5   11406899   E3 ubiquitin ligase PQT3-like 
 mtr-u.5   11424069   E3 ubiquitin ligase PQT3-like 
 mtr-u.5   11411312   E3 ubiquitin ligase PQT3-like 
 ath-u.5   AT4G17410   DWNN domain, a CCHC-type zinc finger 
 ath-u.5   AT5G47430   DWNN domain, a CCHC-type zinc finger 
 vvi-u.5   100854867   E3 ubiquitin ligase PQT3-like 
 sly-u.5   101246898   E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like 
 sly-u.5   101251343   E3 ubiquitin ligase PQT3-like 
 osa-u.5   4348695   E3 ubiquitin ligase PQT3-like 
 zma-u.5   103643542   E3 ubiquitin ligase PQT3-like 

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Top 50 coexpressed genes to 18094602 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18094602 (ppo-u.5 coexpression data)

CoexMap"18104451"


ppoLOC18104451 | Entrez gene ID : 18104451    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 3 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO:0006397 [list] [network] mRNA processing  (275 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (340 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (417 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (225 genes)  IEA  
Protein XP_006376284.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_006376284.3)
Subcellular
localization
TargetP
other 9  (predict for XP_006376284.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18094602

.
ppo-u.5
for
7471635

.
gma-u.5
for
100808703

.
gma-u.5
for
100798536

.
mtr-u.5
for
11406899

.
mtr-u.5
for
11424069

.
mtr-u.5
for
11411312

.
ath-u.5
for
AT4G17410

.
ath-u.5
for
AT5G47430

.
vvi-u.5
for
100854867

.
sly-u.5
for
101246898

.
sly-u.5
for
101251343

.
osa-u.5
for
4348695

.
zma-u.5
for
103643542

.


Ortholog ID: 3823
Species ath ath gma gma sly sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi bna bna cre sbi cit bdi bdi nta
Symbol AT4G17410 AT5G47430 LOC100798536 LOC100808703 LOC101251343 LOC101246898 LOC4348695 LOC103643542 LOC103868196 LOC103839528 LOC100854867 LOC18094602 LOC7471635 LOC11430926 LOC11406899 LOC123137634 LOC123145090 LOC123404523 LOC107929373 LOC106432054 LOC106425442 CHLRE_12g543303v5 LOC8059426 LOC102622566 LOC100842763 LOC100823388 LOC107761502
Function* DWNN domain, a CCHC-type zinc finger DWNN domain, a CCHC-type zinc finger E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PARAQUAT TOLERANCE 3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 uncharacterized protein E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PQT3-like E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PARAQUAT TOLERANCE 3 E3 ubiquitin ligase PARAQUAT TOLERANCE 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 3
bna03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 3
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827452 834790 100798536 100808703 101251343 101246898 4348695 103643542 103868196 103839528 100854867 18094602 7471635 11430926 11406899 123137634 123145090 123404523 107929373 106432054 106425442 5719537 8059426 102622566 100842763 100823388 107761502
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