ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18105018	J domain-containing protein required for chloroplast accumulation response 1
ppo-r.4	18105018	J domain-containing protein required for chloroplast accumulation response 1
ppo-u.5	7466447	auxilin-related protein 2
ppo-u.5	7469358	auxilin-related protein 1
ppo-u.5	18096313	J domain-containing protein required for chloroplast accumulation response 1
gma-u.5	100820002	J domain-containing protein required for chloroplast accumulation response 1
gma-u.5	100814144	auxilin-related protein 2
mtr-u.5	25490179	J domain-containing protein required for chloroplast accumulation response 1
mtr-u.5	25489696	auxilin-related protein 1
mtr-u.5	11435702	auxilin-related protein 2-like
ath-u.5	AT4G12770	Chaperone DnaJ-domain superfamily protein
ath-u.5	AT4G12780	Chaperone DnaJ-domain superfamily protein
ath-u.5	AT1G21660	Chaperone DnaJ-domain superfamily protein
vvi-u.5	100264365	J domain-containing protein required for chloroplast accumulation response 1
vvi-u.5	100853821	auxilin-related protein 2
sly-u.5	101246463	auxilin-related protein 2
sly-u.5	101252682	J domain-containing protein required for chloroplast accumulation response 1
sly-u.5	101260243	auxilin-related protein 2-like
osa-u.5	9272429	auxilin-related protein 2
osa-u.5	4326280	auxilin-related protein 1
osa-u.5	4331953	J domain-containing protein required for chloroplast accumulation response 1
zma-u.5	103650566	auxilin-related protein 1
zma-u.5	103650168	auxilin-related protein 1
zma-u.5	103640949	auxilin-related protein 1

Top 50 coexpressed genes to 18105018 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18105018 (ppo-u.5 coexpression data)

CoexMap"18105018"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0072318 [list] [network] clathrin coat disassembly	(11 genes)	IEA
GO:0072583 [list] [network] clathrin-dependent endocytosis	(41 genes)	IEA

GO CC

GO:0031982 [list] [network] vesicle	(387 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(6111 genes)	IEA
GO:0043231 [list] [network] intracellular membrane-bounded organelle	(6743 genes)	IEA

GO MF

GO:0030276 [list] [network] clathrin binding

(51 genes)

IEA

Protein

XP_006375081.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1, vacu 1, pero 1

(predict for XP_006375081.1)

Subcellular
localization
TargetP

mito 5

(predict for XP_006375081.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18105018	ppo-r.4 for 18105018	ppo-u.5 for 7466447	ppo-u.5 for 7469358	ppo-u.5 for 18096313	gma-u.5 for 100820002	gma-u.5 for 100814144	mtr-u.5 for 25490179	mtr-u.5 for 25489696	mtr-u.5 for 11435702	ath-u.5 for AT4G12770	ath-u.5 for AT4G12780	ath-u.5 for AT1G21660	vvi-u.5 for 100264365	vvi-u.5 for 100853821	sly-u.5 for 101246463	sly-u.5 for 101252682	sly-u.5 for 101260243	osa-u.5 for 9272429	osa-u.5 for 4326280	osa-u.5 for 4331953	zma-u.5 for 103650566	zma-u.5 for 103650168	zma-u.5 for 103640949

Ortholog

Ortholog ID: 755

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

auxilin-related protein 1

auxilin-related protein 2

J domain-containing protein required for chloroplast accumulation response 1

auxilin-related protein 1

Chaperone DnaJ-domain superfamily protein

auxilin-related protein 2

auxilin-related protein 2-like

auxilin-related protein 2

auxilin-related protein 1

auxilin-related protein 2

J domain-containing protein required for chloroplast accumulation response 1

uncharacterized LOC101265552

J domain-containing protein required for chloroplast accumulation response 1

auxilin-related protein 1

J domain-containing protein required for chloroplast accumulation response 1

uncharacterized LOC107801155

auxilin-related protein 2

auxilin-related protein 1

J domain-containing protein required for chloroplast accumulation response 1

auxilin-related protein 1

J domain-containing protein required for chloroplast accumulation response 1

auxilin-related protein 1

auxilin-related protein 2

auxilin-related protein 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00270	Cysteine and methionine metabolism	3
gma00920	Sulfur metabolism	2
gma01200	Carbon metabolism	2
gma01230	Biosynthesis of amino acids	2
gma01320	Sulfur cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	4
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	5
ath05100	Bacterial invasion of epithelial cells	3
ath04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	5
bra04120	Ubiquitin mediated proteolysis	4
bra04144	Endocytosis	3
bra03250	Viral life cycle - HIV-1	2
bra03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	3
vvi03015	mRNA surveillance pathway	2
vvi04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	4
cit04141	Protein processing in endoplasmic reticulum	2
cit04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00380	Tryptophan metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta01200	Carbon metabolism	2
nta04016	MAPK signaling pathway - plant	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta00760	Nicotinate and nicotinamide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00500	Starch and sucrose metabolism	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00650	Butanoate metabolism	2
hvu01200	Carbon metabolism	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00310	Lysine degradation	2
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	3
bdi04144	Endocytosis	2
bdi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04130	SNARE interactions in vesicular transport	2

Expression

Expression pattern

Entrez Gene ID^*

7469358

7469171

100820241

100820002

25490179

25489696

826889

826890

103834175

103829369

100853821

107954727

107912493

106350090

111213590

102618123

102620227

101252682

101265552

102591785

102597179

107803957

107801155

9272429

4326280

103650566

100278637

123098386

123096853

123449424

8075339

8082075

100845320

100832373

5716592

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	3	3	2	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18105018 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18105018 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**