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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18106951   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 ppo-r.4   18106951   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 gma-u.5   100814109   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 gma-u.5   100807978   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 mtr-u.5   11442373   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 ath-u.5   AT2G43370   RNA-binding (RRM/RBD/RNP motifs) family protein 
 vvi-u.5   100261074   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 sly-u.5   101256810   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 osa-u.5   4347560   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 
 zma-u.5   100383273   U11/U12 small nuclear ribonucleoprotein 35 kDa protein 

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Top 50 coexpressed genes to 18106951 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18106951 (ppo-u.5 coexpression data)

CoexMap"18106951"


ppoLOC18106951 | Entrez gene ID : 18106951    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (213 genes)  IEA  
GO CC
GO:0005689 [list] [network] U12-type spliceosomal complex  (24 genes)  IEA  
GO:0071011 [list] [network] precatalytic spliceosome  (56 genes)  IEA  
GO MF
GO:0017069 [list] [network] snRNA binding  (24 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (348 genes)  IEA  
Protein XP_024444460.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_024444460.1)
Subcellular
localization
TargetP
other 7,  scret 5  (predict for XP_024444460.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18106951

.
ppo-r.4
for
18106951

.
gma-u.5
for
100814109

.
gma-u.5
for
100807978

.
mtr-u.5
for
11442373

.
ath-u.5
for
AT2G43370

.
vvi-u.5
for
100261074

.
sly-u.5
for
101256810

.
osa-u.5
for
4347560

.
zma-u.5
for
100383273

.


Ortholog ID: 9436
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT2G43370 LOC100814109 LOC100807978 LOC101256810 LOC4347560 LOC100383273 LOC103858068 LOC100261074 LOC18106951 LOC11442373 LOC123104384 LOC123112666 LOC123399871 LOC107933655 LOC107890921 LOC106388322 LOC106446721 LOC8054808 LOC102599679 LOC102630036 LOC100823301 LOC107811410 LOC107807733
Function* RNA-binding (RRM/RBD/RNP motifs) family protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein U11/U12 small nuclear ribonucleoprotein 35 kDa protein-like U11/U12 small nuclear ribonucleoprotein 35 kDa protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
osa03015 mRNA surveillance pathway 2
osa04144 Endocytosis 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae04016 MAPK signaling pathway - plant 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818938 100814109 100807978 101256810 4347560 100383273 103858068 100261074 18106951 11442373 123104384 123112666 123399871 107933655 107890921 106388322 106446721 8054808 102599679 102630036 100823301 107811410 107807733
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