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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7466063   clathrin light chain 2 
 ppo-u.5   7488013   clathrin light chain 2 
 ppo-u.5   7490332   clathrin light chain 2 
 gma-u.5   100818117   clathrin light chain 1 
 gma-u.5   100813474   uncharacterized LOC100813474 
 gma-u.5   100788673   clathrin light chain 1 
 mtr-u.5   11421620   clathrin light chain 1 
 mtr-u.5   25493188   clathrin light chain 1 
 ath-u.5   AT2G20760   Clathrin light chain protein 
 ath-u.5   CLC2   Clathrin light chain protein 
 ath-u.5   AT3G51890   Clathrin light chain protein 
 vvi-u.5   100854215   clathrin light chain 1 
 vvi-u.5   100248438   clathrin light chain 2 
 sly-u.5   101261300   clathrin light chain 1 
 sly-u.5   101250146   clathrin light chain 2 
 sly-u.5   101266991   clathrin light chain 1 
 osa-u.5   4337419   clathrin light chain 1-like 
 osa-u.5   4342159   clathrin light chain 2-like 
 zma-u.5   113475843   uncharacterized LOC113475843 
 zma-u.5   100277113   uncharacterized LOC100277113 
 zma-u.5   100216721   Clathrin light chain 2 

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Top 50 coexpressed genes to 7466063 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7466063 (ppo-u.5 coexpression data)

CoexMap"18108572"


ppoLOC18108572 | Entrez gene ID : 18108572    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 3 2 3 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0048268 [list] [network] clathrin coat assembly  (26 genes)  IEA  
GO:0072583 [list] [network] clathrin-dependent endocytosis  (41 genes)  IEA  
GO:0006886 [list] [network] intracellular protein transport  (350 genes)  IEA  
GO CC
GO:0030132 [list] [network] clathrin coat of coated pit  (15 genes)  IEA  
GO:0030130 [list] [network] clathrin coat of trans-Golgi network vesicle  (16 genes)  IEA  
GO:0005886 [list] [network] plasma membrane  (1125 genes)  IEA  
GO MF
GO:0032050 [list] [network] clathrin heavy chain binding  (26 genes)  IEA  
GO:0005198 [list] [network] structural molecule activity  (596 genes)  IEA  
Protein XP_052305604.1 [sequence] [blastp]
XP_052305605.1 [sequence] [blastp]
XP_052305606.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_052305604.1)
nucl 9  (predict for XP_052305605.1)
nucl 9  (predict for XP_052305606.1)
Subcellular
localization
TargetP
other 8  (predict for XP_052305604.1)
other 8  (predict for XP_052305605.1)
other 8  (predict for XP_052305606.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7466063

.
ppo-u.5
for
7488013

.
ppo-u.5
for
7490332

.
gma-u.5
for
100818117

.
gma-u.5
for
100813474

.
gma-u.5
for
100788673

.
mtr-u.5
for
11421620

.
mtr-u.5
for
25493188

.
ath-u.5
for
AT2G20760

.
ath-u.5
for
CLC2

.
ath-u.5
for
AT3G51890

.
vvi-u.5
for
100854215

.
vvi-u.5
for
100248438

.
sly-u.5
for
101261300

.
sly-u.5
for
101250146

.
sly-u.5
for
101266991

.
osa-u.5
for
4337419

.
osa-u.5
for
4342159

.
zma-u.5
for
113475843

.
zma-u.5
for
100277113

.
zma-u.5
for
100216721

.


Ortholog ID: 1452
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT3G51890 CLC2 LOC100820255 LOC100813474 LOC101266991 LOC101250146 LOC4337419 LOC4342159 LOC113475843 LOC100277113 LOC103842584 LOC103846752 LOC100248438 LOC100854215 LOC7488013 LOC7490332 LOC11421620 LOC123164928 LOC123191067 LOC123407289 LOC123428331 LOC121212704 LOC107960000 LOC106368789 LOC106391573 LOC8069249 LOC8076473 LOC102601027 LOC102585812 LOC102611533 LOC102626898 LOC100825998 LOC100829679 LOC107763511 LOC107760966
Function* Clathrin light chain protein Clathrin light chain protein clathrin light chain 1 uncharacterized LOC100813474 clathrin light chain 1 clathrin light chain 2 clathrin light chain 1-like clathrin light chain 2-like uncharacterized LOC113475843 uncharacterized LOC100277113 clathrin light chain 1 clathrin light chain 2 clathrin light chain 2 clathrin light chain 1 clathrin light chain 2 clathrin light chain 2 clathrin light chain 1 clathrin light chain 2 clathrin light chain 1 clathrin light chain 2 clathrin light chain 1-like clathrin light chain 2 clathrin light chain 2 clathrin light chain 1 clathrin light chain 2 clathrin light chain 2 clathrin light chain 1 clathrin light chain 1-like clathrin light chain 2-like clathrin light chain 1-like clathrin light chain 3-like clathrin light chain 1 clathrin light chain 2 clathrin light chain 2-like clathrin light chain 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma05100 Bacterial invasion of epithelial cells 3
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 5
zma04145 Phagosome 4
zma04517 IgSF CAM signaling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03060 Protein export 4
bra04141 Protein processing in endoplasmic reticulum 4
bra04145 Phagosome 4
bra04016 MAPK signaling pathway - plant 2
bra04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04130 SNARE interactions in vesicular transport 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi00071 Fatty acid degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01250 Biosynthesis of nucleotide sugars 4
vvi00520 Amino sugar and nucleotide sugar metabolism 3
vvi00541 Biosynthesis of various nucleotide sugars 2
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 4
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 6
ppo03010 Ribosome 3
ppo03060 Protein export 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00510 N-Glycan biosynthesis 4
tae04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 3
hvu01250 Biosynthesis of nucleotide sugars 3
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 5
bna04075 Plant hormone signal transduction 3
bna04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03083 Polycomb repressive complex 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00520 Amino sugar and nucleotide sugar metabolism 6
bdi01250 Biosynthesis of nucleotide sugars 6
bdi00040 Pentose and glucuronate interconversions 2
bdi00053 Ascorbate and aldarate metabolism 2
bdi00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04517 IgSF CAM signaling 2
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta04130 SNARE interactions in vesicular transport 4
nta04145 Phagosome 2
nta04148 Efferocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824352 818594 100820255 100813474 101266991 101250146 4337419 4342159 113475843 100277113 103842584 103846752 100248438 100854215 7488013 7490332 11421620 123164928 123191067 123407289 123428331 121212704 107960000 106368789 106391573 8069249 8076473 102601027 102585812 102611533 102626898 100825998 100829679 107763511 107760966
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