ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	18109105	farnesol kinase, chloroplastic
ppo-r.4	18109105	farnesol kinase, chloroplastic
ppo-u.5	7487814	probable phytol kinase 3, chloroplastic
gma-u.5	100793696	probable phytol kinase 3, chloroplastic
mtr-u.5	25491458	probable phytol kinase 3, chloroplastic
mtr-u.5	25491456	probable phytol kinase 3, chloroplastic
mtr-u.5	25490962	probable phytol kinase 3, chloroplastic
ath-u.5	FOLK	Phosphatidate cytidylyltransferase family protein
bra-r.6	103845287	farnesol kinase, chloroplastic
bra-r.6	103856907	farnesol kinase, chloroplastic-like
bra-r.6	103856674	farnesol kinase, chloroplastic-like
vvi-u.5	100243279	farnesol kinase, chloroplastic
vvi-u.5	100265588	farnesol kinase, chloroplastic
ghi-r.1	107957660	probable phytol kinase 3, chloroplastic
ghi-r.1	107936061	probable phytol kinase 3, chloroplastic
ghi-r.1	107927038	farnesol kinase, chloroplastic
bna-r.1	106435934	farnesol kinase, chloroplastic
bna-r.1	106435924	farnesol kinase, chloroplastic
bna-r.1	106420546	farnesol kinase, chloroplastic
cit-r.1	102607196	probable phytol kinase 3, chloroplastic
sly-u.5	101252619	probable phytol kinase 3, chloroplastic
sot-r.1	102606110	probable phytol kinase 3, chloroplastic
nta-r.1	107825879	putative phytol kinase 3, chloroplastic
nta-r.1	107802957	putative phytol kinase 3, chloroplastic
nta-r.1	107798184	putative phytol kinase 2, chloroplastic
osa-u.5	4327435	probable phytol kinase 2, chloroplastic
osa-u.5	4349551	probable phytol kinase 2, chloroplastic
osa-u.5	4351259	probable phytol kinase 2, chloroplastic
zma-u.5	100191275	uncharacterized LOC100191275
zma-u.5	100272684	uncharacterized LOC100272684
tae-r.2	123124621	probable phytol kinase 2, chloroplastic
tae-r.2	123115995	probable phytol kinase 2, chloroplastic
hvu-r.1	123398285	probable phytol kinase 2, chloroplastic
hvu-r.1	123440564	probable phytol kinase 2, chloroplastic
sbi-r.1	8085428	probable phytol kinase 2, chloroplastic
sbi-r.1	8079965	probable phytol kinase 2, chloroplastic
sbi-r.1	8055486	probable phytol kinase 2, chloroplastic
bdi-r.1	100838535	probable phytol kinase 2, chloroplastic
bdi-r.1	100826738	probable phytol kinase 2, chloroplastic

Top 50 coexpressed genes to 18109105 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 18109105 (ppo-u.5 coexpression data)

CoexMap"18109105"

[Cytoscape]

Annotation

functional annotation

KEGG

pop00900 [list] [network] Terpenoid backbone biosynthesis (75 genes)

GO BP

GO CC

GO MF

GO:0016301 [list] [network] kinase activity

(1762 genes)

IEA

Protein

XP_024464124.1 [sequence] [blastp]
XP_024464125.1 [sequence] [blastp]
XP_052311830.1 [sequence] [blastp]
XP_052311831.1 [sequence] [blastp]
XP_052311832.1 [sequence] [blastp]
XP_052311834.1 [sequence] [blastp]
XP_052311835.1 [sequence] [blastp]
XP_052311836.1 [sequence] [blastp]
XP_052311837.1 [sequence] [blastp]
XP_052311838.1 [sequence] [blastp]
XP_052311839.1 [sequence] [blastp]
XP_052311840.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 8, plas 1	(predict for XP_024464124.1)
vacu 8, extr 1	(predict for XP_024464125.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for XP_052311830.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for XP_052311831.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for XP_052311832.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for XP_052311834.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for XP_052311835.1)
chlo 7, mito 1, nucl 1, plas 1, cyto_mito 1, nucl_plas 1	(predict for XP_052311836.1)
vacu 8, plas 1	(predict for XP_052311837.1)
vacu 7, plas 2	(predict for XP_052311838.1)
vacu 7, plas 2	(predict for XP_052311839.1)
chlo 3, extr 2, nucl 1, cyto_nucl 1, vacu 1, chlo_mito 1	(predict for XP_052311840.1)

Subcellular
localization
TargetP

scret 8	(predict for XP_024464124.1)
mito 3	(predict for XP_024464125.1)
mito 8, chlo 5	(predict for XP_052311830.1)
mito 8, chlo 5	(predict for XP_052311831.1)
mito 8, chlo 5	(predict for XP_052311832.1)
mito 8, chlo 5	(predict for XP_052311834.1)
mito 8, chlo 5	(predict for XP_052311835.1)
mito 8, chlo 5	(predict for XP_052311836.1)
scret 8	(predict for XP_052311837.1)
scret 5, other 5	(predict for XP_052311838.1)
other 5, scret 5	(predict for XP_052311839.1)
mito 3	(predict for XP_052311840.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 18109105	ppo-r.4 for 18109105	ppo-u.5 for 7487814	gma-u.5 for 100793696	mtr-u.5 for 25491458	mtr-u.5 for 25491456	mtr-u.5 for 25490962	ath-u.5 for FOLK	bra-r.6 for 103845287	bra-r.6 for 103856907	bra-r.6 for 103856674	vvi-u.5 for 100243279	vvi-u.5 for 100265588	ghi-r.1 for 107957660	ghi-r.1 for 107936061	ghi-r.1 for 107927038	bna-r.1 for 106435934	bna-r.1 for 106435924	bna-r.1 for 106420546	cit-r.1 for 102607196	sly-u.5 for 101252619	sot-r.1 for 102606110	nta-r.1 for 107825879	nta-r.1 for 107802957	nta-r.1 for 107798184	osa-u.5 for 4327435	osa-u.5 for 4349551	osa-u.5 for 4351259	zma-u.5 for 100191275	zma-u.5 for 100272684	tae-r.2 for 123124621	tae-r.2 for 123115995	hvu-r.1 for 123398285	hvu-r.1 for 123440564	sbi-r.1 for 8085428	sbi-r.1 for 8079965	sbi-r.1 for 8055486	bdi-r.1 for 100838535	bdi-r.1 for 100826738

Ortholog

Ortholog ID: 3738

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

FOLK

Function^*

farnesol kinase, chloroplastic

probable phytol kinase 3, chloroplastic

Phosphatidate cytidylyltransferase family protein

farnesol kinase, chloroplastic

farnesol kinase, chloroplastic-like

farnesol kinase, chloroplastic

probable phytol kinase 3, chloroplastic

farnesol kinase, chloroplastic

farnesol kinase, chloroplastic-like

probable phytol kinase 3, chloroplastic

putative phytol kinase 3, chloroplastic

putative phytol kinase 2, chloroplastic

putative phytol kinase 3, chloroplastic

probable phytol kinase 2, chloroplastic

uncharacterized LOC100191275

uncharacterized LOC100272684

probable phytol kinase 2, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo00860	Porphyrin metabolism	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	4
mtr00220	Arginine biosynthesis	2
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr01230	Biosynthesis of amino acids	2
mtr00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	4
mtr00220	Arginine biosynthesis	2
mtr01210	2-Oxocarboxylic acid metabolism	2
mtr01230	Biosynthesis of amino acids	2
mtr00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00900	Terpenoid backbone biosynthesis	3
mtr03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04712	Circadian rhythm - plant	2
bra00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00900	Terpenoid backbone biosynthesis	3
vvi00561	Glycerolipid metabolism	2
vvi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	4
vvi00970	Aminoacyl-tRNA biosynthesis	3
vvi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	3
ghi03040	Spliceosome	3
ghi03018	RNA degradation	2
ghi03050	Proteasome	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	3
ghi03040	Spliceosome	3
ghi03018	RNA degradation	2
ghi03050	Proteasome	2
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00062	Fatty acid elongation	4
ghi04626	Plant-pathogen interaction	4
ghi03015	mRNA surveillance pathway	4
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	6
bna04016	MAPK signaling pathway - plant	2
bna04070	Phosphatidylinositol signaling system	2
bna04075	Plant hormone signal transduction	2
bna04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	6
cit01200	Carbon metabolism	3
cit01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	6
nta00900	Terpenoid backbone biosynthesis	3
nta00740	Riboflavin metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00900	Terpenoid backbone biosynthesis	3
nta03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	10
nta00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00900	Terpenoid backbone biosynthesis	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	5
zma00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
zma01200	Carbon metabolism	2
zma00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	4
tae00010	Glycolysis / Gluconeogenesis	3
tae00051	Fructose and mannose metabolism	3
tae00710	Carbon fixation by Calvin cycle	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

18109105

7487814

100793696

25491458

25491456

25490962

835969

103845287

103856907

103856674

100243279

100265588

107957660

107936061

107963843

106420546

106385190

106385189

102607196

101252619

102606110

107802957

107798184

142164659

4327435

4349551

4351259

100191275

100272684

123071295

123106884

123398285

123440564

8085428

8079965

8055486

100838535

100826738

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	3	1	3	2	3	3	1	1	1	3	3	2	2	2	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 18109105 (ppo-u.5 coexpression data)

Top 50 enrichment test to 18109105 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**