Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25480544   RNA polymerase sigma factor sigA 
 mtr-r.5   25480544   RNA polymerase sigma factor sigA 
 gma-u.5   100801884   RNA polymerase sigma factor sigA 
 gma-u.5   100794548   RNA polymerase sigma factor sigA 
 ppo-u.5   7493891   RNA polymerase sigma factor sigA 
 ppo-u.5   7459204   RNA polymerase sigma factor sigA 
 ath-u.5   SIGA   sigma factor A 
 bra-r.6   103853304   RNA polymerase sigma factor sigA 
 vvi-u.5   100256191   RNA polymerase sigma factor sigA 
 ghi-r.1   107938687   RNA polymerase sigma factor sigA 
 ghi-r.1   107913567   RNA polymerase sigma factor sigA 
 ghi-r.1   107909034   RNA polymerase sigma factor sigA 
 bna-r.1   106388196   RNA polymerase sigma factor sigA 
 bna-r.1   106390364   RNA polymerase sigma factor sigA-like 
 cit-r.1   102606892   RNA polymerase sigma factor sigA 
 sly-u.5   101263418   RNA polymerase sigma factor sigA 
 sly-u.5   101252856   RNA polymerase sigma factor sigA 
 sot-r.1   102592902   RNA polymerase sigma factor sigA 
 sot-r.1   102585592   RNA polymerase sigma factor sigA-like 
 nta-r.1   107804695   RNA polymerase sigma factor sigA 
 nta-r.1   107795931   RNA polymerase sigma factor sigA-like 
 nta-r.1   107790547   RNA polymerase sigma factor sigA-like 
 osa-u.5   4344738   RNA polymerase sigma factor sigA-like 
 zma-u.5   541691   RNA polymerase sigma factor sigA 
 zma-u.5   541692   sigma factor of plastid RNA polymerase 
 tae-r.2   123147203   RNA polymerase sigma factor sigA 
 tae-r.2   542980   RNA polymerase sigma factor sigA 
 tae-r.2   123157122   RNA polymerase sigma factor sigA 
 hvu-r.1   123407383   RNA polymerase sigma factor sigA 
 sbi-r.1   8080867   RNA polymerase sigma factor sigA 
 bdi-r.1   100827900   RNA polymerase sigma factor sigA 

close


Top 50 coexpressed genes to 25480544 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 25480544 (mtr-u.5 coexpression data)

CoexMap"25480544"


mtrLOC25480544 | Entrez gene ID : 25480544      
Species mtr gma ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 2 2 1 1 1 3 2 1 2 2 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (78 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1635 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1100 genes)  IEA  
Protein XP_013442452.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  mito 1,  pero 1  (predict for XP_013442452.1)
Subcellular
localization
TargetP
other 4  (predict for XP_013442452.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25480544
mtr-r.5
for
25480544
gma-u.5
for
100801884
gma-u.5
for
100794548
ppo-u.5
for
7493891
ppo-u.5
for
7459204
ath-u.5
for
SIGA
bra-r.6
for
103853304
vvi-u.5
for
100256191
ghi-r.1
for
107938687
ghi-r.1
for
107913567
ghi-r.1
for
107909034
bna-r.1
for
106388196
bna-r.1
for
106390364
cit-r.1
for
102606892
sly-u.5
for
101263418
sly-u.5
for
101252856
sot-r.1
for
102592902
sot-r.1
for
102585592
nta-r.1
for
107804695
nta-r.1
for
107795931
nta-r.1
for
107790547
osa-u.5
for
4344738
zma-u.5
for
541691
zma-u.5
for
541692
tae-r.2
for
123147203
tae-r.2
for
542980
tae-r.2
for
123157122
hvu-r.1
for
123407383
sbi-r.1
for
8080867
bdi-r.1
for
100827900


Ortholog ID: 7086
Species mtr gma gma ppo ppo ath bra vvi ghi ghi ghi bna bna cit sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol LOC25480544 LOC100801884 LOC100794548 LOC7493891 LOC7459204 SIGA LOC103853304 LOC100256191 LOC107938687 LOC107913567 LOC107891353 LOC106388196 LOC106390364 LOC102606892 LOC101263418 LOC101252856 LOC102592902 LOC102585592 LOC107804695 LOC107790547 LOC107805048 LOC4344738 LOC541691 LOC541692 LOC123147203 LOC542980 LOC123157122 LOC123407383 LOC8080867 LOC100827900
Function* RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA sigma factor A RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA sigma factor of plastid RNA polymerase RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 4
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 8
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 8
gma01200 Carbon metabolism 8
gma00860 Porphyrin metabolism 5
gma00010 Glycolysis / Gluconeogenesis 3
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 8
ppo00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath00900 Terpenoid backbone biosynthesis 2
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 5
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 5
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00710 Carbon fixation by Calvin cycle 4
sly01230 Biosynthesis of amino acids 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 8
nta00195 Photosynthesis 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 4
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25480544 100801884 100794548 7493891 7459204 842794 103853304 100256191 107938687 107913567 107891353 106388196 106390364 102606892 101263418 101252856 102592902 102585592 107804695 107790547 107805048 4344738 541691 541692 123147203 542980 123157122 123407383 8080867 100827900
The preparation time of this page was 0.1 [sec].