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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25484200   photosystem II reaction center PSB28 protein, chloroplastic 
 mtr-r.5   25484200   photosystem II reaction center PSB28 protein, chloroplastic 
 gma-u.5   100780777   photosystem II reaction center PSB28 protein, chloroplastic 
 gma-u.5   100306491   photosystem II reaction center PSB28-like 
 ppo-u.5   7459542   photosystem II reaction center PSB28 protein, chloroplastic 
 ath-u.5   PSB28   photosystem II reaction center PSB28 protein 
 vvi-u.5   100260011   photosystem II reaction center PSB28 protein, chloroplastic 
 sly-u.5   101245880   photosystem II reaction center Psb28 protein 
 osa-u.5   4326537   photosystem II reaction center PSB28 protein, chloroplastic-like 
 zma-u.5   103650780   photosystem II reaction center PSB28 protein, chloroplastic 
 zma-u.5   100284876   photosystem II reaction center W protein 
 zma-u.5   103650783   photosystem II reaction center PSB28 protein, chloroplastic 

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Top 50 coexpressed genes to 25484200 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25484200 (mtr-u.5 coexpression data)

CoexMap"25484200"


mtrLOC25484200 | Entrez gene ID : 25484200      
Species mtr gma ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 2 1 1 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00195 [list] [network] Photosynthesis (100 genes)
GO BP
GO:0015979 [list] [network] photosynthesis  (108 genes)  IEA  
GO CC
GO:0009654 [list] [network] photosystem II oxygen evolving complex  (20 genes)  IEA  
GO:0009523 [list] [network] photosystem II  (37 genes)  IEA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (117 genes)  IEA  
GO MF
Protein XP_013468423.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 2,  cyto_nucl 2,  mito 1  (predict for XP_013468423.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_013468423.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25484200

.
mtr-r.5
for
25484200

.
gma-u.5
for
100780777

.
gma-u.5
for
100306491

.
ppo-u.5
for
7459542

.
ath-u.5
for
PSB28

.
vvi-u.5
for
100260011

.
sly-u.5
for
101245880

.
osa-u.5
for
4326537

.
zma-u.5
for
103650780

.
zma-u.5
for
100284876

.
zma-u.5
for
103650783

.


Ortholog ID: 5811
Species ath gma gma sly osa zma zma bra bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol PSB28 LOC100306491 LOC100780777 LOC101245880 LOC4326537 LOC109945128 LOC103636309 LOC103861848 LOC103854241 LOC100260011 LOC7459542 LOC25484200 LOC123062562 LOC123079721 LOC123394947 LOC123440539 LOC107952737 LOC121232332 LOC106389780 LOC111207700 CHLRE_10g440450v5 LOC8081314 LOC102586634 LOC102611091 LOC100840188 LOC107797030 LOC107768014
Function* photosystem II reaction center PSB28 protein photosystem II reaction center PSB28-like photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center Psb28 protein photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center PSB28 protein, chloroplastic-like photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic uncharacterized protein photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center Psb28 protein photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center PSB28 protein, chloroplastic photosystem II reaction center Psb28 protein photosystem II reaction center Psb28 protein-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 3
ath00710 Carbon fixation by Calvin cycle 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 8
gma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 4
gma00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 4
sly01200 Carbon metabolism 3
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 10
zma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra00195 Photosynthesis 2
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 4
vvi00710 Carbon fixation by Calvin cycle 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 6
ppo01200 Carbon metabolism 6
ppo00195 Photosynthesis 3
ppo00620 Pyruvate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae04712 Circadian rhythm - plant 2
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 8
hvu00710 Carbon fixation by Calvin cycle 5
hvu00630 Glyoxylate and dicarboxylate metabolism 5
hvu00195 Photosynthesis 4
hvu00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 4
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 5
cit01200 Carbon metabolism 4
cit00010 Glycolysis / Gluconeogenesis 2
cit00710 Carbon fixation by Calvin cycle 2
cit00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 6
bdi01200 Carbon metabolism 6
bdi00710 Carbon fixation by Calvin cycle 4
bdi00260 Glycine, serine and threonine metabolism 2
bdi00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
nta00195 Photosynthesis 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00195 Photosynthesis 2
nta00053 Ascorbate and aldarate metabolism 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828984 100306491 100780777 101245880 4326537 109945128 103636309 103861848 103854241 100260011 7459542 25484200 123062562 123079721 123394947 123440539 107952737 121232332 106389780 111207700 5716125 8081314 102586634 102611091 100840188 107797030 107768014
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