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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   25487021   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 mtr-r.5   25487021   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 gma-u.5   102667121   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 gma-u.5   100807983   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ppo-u.5   7480369   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ppo-u.5   7454990   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 
 ath-u.5   AT1G79080   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100247376   pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like 
 vvi-u.5   104877963   pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like 
 sly-u.5   101259766   pentatricopeptide repeat-containing protein At1g79080, chloroplastic 

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Top 50 coexpressed genes to 25487021 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 25487021 (mtr-u.5 coexpression data)

CoexMap"25487021"


mtrLOC25487021 | Entrez gene ID : 25487021    
Species mtr gma ppo ath vvi sly hvu zma bna cit bra ghi osa sbi bdi nta tae cre sot
Paralog 2 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_013464320.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 5,  mito 1  (predict for XP_013464320.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_013464320.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
25487021
mtr-r.5
for
25487021
gma-u.5
for
102667121
gma-u.5
for
100807983
ppo-u.5
for
7480369
ppo-u.5
for
7454990
ath-u.5
for
AT1G79080
vvi-u.5
for
100247376
vvi-u.5
for
104877963
sly-u.5
for
101259766


Ortholog ID: 12272
Species mtr gma gma ppo ppo ath bra vvi vvi ghi ghi bna bna sly sot nta nta
Symbol LOC25487021 LOC100807983 LOC102667121 LOC7454990 LOC7480369 AT1G79080 LOC103832386 LOC100247376 LOC104877963 LOC107903832 LOC107948485 LOC125594923 LOC106354765 LOC101259766 LOC102583838 LOC107806282 LOC107762517
Function* pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like pentatricopeptide repeat-containing protein At3g53700, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic pentatricopeptide repeat-containing protein At1g79080, chloroplastic uncharacterized LOC107806282 uncharacterized LOC107762517
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00240 Pyrimidine metabolism 2
bra01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00710 Carbon fixation by Calvin cycle 4
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00030 Pentose phosphate pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 25487021 100807983 102667121 7454990 7480369 844249 103832386 100247376 104877963 107903832 107948485 125594923 106354765 101259766 102583838 107806282 107762517
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