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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   AGL1L   agamous-like MADS-box protein AGL1-like 
 gma-u.5   100782733   agamous-like MADS-box protein MADS1 
 gma-u.5   100808734   agamous-like MADS-box protein MADS1 
 ath-u.5   AG   K-box region and MADS-box transcription factor family protein 
 ath-u.5   STK   K-box region and MADS-box transcription factor family protein 
 vvi-u.5   AG   agamous 
 vvi-u.5   MADS5   MADS-box protein 5 
 vvi-u.5   MADS1   MAD-box transcripion factor 
 sly-u.5   AG1   floral homeotic protein AGAMOUS 
 sly-u.5   MBP3   agamous-like MADS-box protein MBP3 
 osa-u.5   4324888   MADS-box transcription factor 21-like 
 osa-u.5   9271572   MADS-box transcription factor 3-like 
 zma-u.5   542244   homologue of Arabidopsis gene AGAMOUS 
 zma-u.5   542039   MADS-box transcription factor 21 
 zma-u.5   542037   Agamous-like MADS-box protein AGL5 

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Top 50 coexpressed genes to AGL1L (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AGL1L (gma-u.5 coexpression data)

CoexMap"25490658"


mtrLOC25490658 | Entrez gene ID : 25490658      
Species gma ath vvi sly osa zma sbi nta mtr cre bra cit hvu ppo bdi sot tae bna ghi
Paralog 3 2 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II  (161 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2707 genes)  IEA  
GO MF
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding  (259 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (607 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1100 genes)  IEA  
Protein XP_024636027.1 [sequence] [blastp]
XP_039687185.1 [sequence] [blastp]
XP_039687186.1 [sequence] [blastp]
XP_039687187.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_024636027.1)
nucl 10  (predict for XP_039687185.1)
nucl 10  (predict for XP_039687186.1)
nucl 10  (predict for XP_039687187.1)
Subcellular
localization
TargetP
other 9  (predict for XP_024636027.1)
other 9  (predict for XP_039687185.1)
other 9  (predict for XP_039687186.1)
other 9  (predict for XP_039687187.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
AGL1L

.
gma-u.5
for
100782733

.
gma-u.5
for
100808734

.
ath-u.5
for
AG

.
ath-u.5
for
STK

.
vvi-u.5
for
AG

.
vvi-u.5
for
MADS5

.
vvi-u.5
for
MADS1

.
sly-u.5
for
AG1

.
sly-u.5
for
MBP3

.
osa-u.5
for
4324888

.
osa-u.5
for
9271572

.
zma-u.5
for
542244

.
zma-u.5
for
542039

.
zma-u.5
for
542037

.


Ortholog ID: 775
Species ath gma gma sly sly osa osa zma zma bra bra vvi vvi tae tae ghi ghi bna bna sbi sbi cit bdi
Symbol SHP1 LOC100808734 LOC100776263 MBP3 AG1 LOC9271572 LOC4324888 LOC542244 LOC542037 LOC103861026 LOC103866661 AG MADS1 LOC100136964 LOC100136965 LOC107914052 LOC107959674 LOC106353173 LOC106428192 LOC8080509 LOC110430121 LOC102620453 LOC100824190
Function* K-box region and MADS-box transcription factor family protein agamous-like MADS-box protein MADS1 floral homeotic protein AGAMOUS-like agamous-like MADS-box protein MBP3 floral homeotic protein AGAMOUS MADS-box transcription factor 3-like MADS-box transcription factor 21-like homologue of Arabidopsis gene AGAMOUS Agamous-like MADS-box protein AGL5 floral homeotic protein AGAMOUS agamous-like MADS-box protein AGL5 agamous MAD-box transcripion factor MADS-box transcription factor 21 MADS-box transcription factor 3 agamous-like MADS-box protein AGL11 agamous-like MADS-box protein MADS1 agamous-like MADS-box protein AGL1 agamous-like MADS-box protein AGL1 MADS-box transcription factor 3 MADS-box transcription factor 3-like agamous-like MADS-box protein AGL11 MADS-box transcription factor 58-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00062 Fatty acid elongation 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma00010 Glycolysis / Gluconeogenesis 2
zma00053 Ascorbate and aldarate metabolism 2
zma00071 Fatty acid degradation 2
zma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00280 Valine, leucine and isoleucine degradation 2
ghi00640 Propanoate metabolism 2
ghi00785 Lipoic acid metabolism 2
ghi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00941 Flavonoid biosynthesis 3
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00195 Photosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825047 100808734 100776263 101249093 543840 9271572 4324888 542244 542037 103861026 103866661 100261787 100232864 100136964 100136965 107914052 107959674 106353173 106428192 8080509 110430121 102620453 100824190
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